View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_high_16 (Length: 414)
Name: NF3410_high_16
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 52832258 - 52831852
Alignment:
| Q |
1 |
tagagaacaccaacaggatattttcagattaaaacaagaggttacccgcttgcaaaaaactgtaagatctgctacaaattatagttttttacattaaatt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52832258 |
tagagaacaccaacaagatattttcagattaaaacaagaggttacccgcttgcaaaaaactgtaagatctgctacaaattatagttttttacattaaatt |
52832159 |
T |
|
| Q |
101 |
tgacannnnnnnnnnggtgggttgatttgtgttatttgaaattgcagctggaagatataaagggaaatataaaagggtcagaagaaagtattgaaattga |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52832158 |
tgacattttttttttggtgggttgatttgtgttatttgaaattgcagctggaagatataaagggaaatataaaagggtcagaagaaagtattgaaattga |
52832059 |
T |
|
| Q |
201 |
tgaaaaaatcaacaagggtgtttctgttgcggatnnnnnnnnnnnnnnnnnnnnnnntgatcctattagcttagaacgaagagagaaagttaaagatgcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52832058 |
tgaaaaaatcaacaagggtgtttctgttgcggatgaggaggaggaggaggaggagaatgatcctattagcttagaacgaagagagaaagttaaagatgcc |
52831959 |
T |
|
| Q |
301 |
atgcttcatgcatggacatcttatgaaaaatatgcctggggcaaggatgaacttaaggtgcttttccatttgttttgtattttgtttatctacttcttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52831958 |
atgcttcatgcatggacatcttatgaaaaatatgcctggggcaaggatgaacttaaggtgcttttccatttgttttgtattttgtttatctacttcttga |
52831859 |
T |
|
| Q |
401 |
tgatgtc |
407 |
Q |
| |
|
| ||||| |
|
|
| T |
52831858 |
ttatgtc |
52831852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University