View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_22 (Length: 384)
Name: NF3410_high_22
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 43379921 - 43380278
Alignment:
| Q |
17 |
agaatggtattgaagaacagatattggattgtgaggcatggcaagagcattcccaacgagcgaggccttattgtttcttccatggtaacaatccattaga |
116 |
Q |
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| T |
43379921 |
agaatggtattgaagaacagatattggattgtgaggcatggcaagagcattcccaacgagcgaggccttattgtttcttccatggtaacaatccattaga |
43380020 |
T |
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| Q |
117 |
tttttatataatcgcgttgtttttcatttataattataatcatcatgtttaaattcaattcacaggaaaatggtattctccctgaattccaattggcccc |
216 |
Q |
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| T |
43380021 |
tttttatataatcgcgttgtttttcat------ttataatcatcatgttta-----aattcacaggaaaatggtattctccctgaattccaattggcccc |
43380109 |
T |
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| Q |
217 |
agaaggcgttaatcaagcacaactcgctggatattcatttcaaaaggtatcaatcaatttta----acaaacaatttgaatttgaatttgaatttgaata |
312 |
Q |
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| T |
43380110 |
agaaggcgttaatcaagcacaactcgctggatattcatttcaaaaggtatcaatcaattttatttgaatttgaatttgaatttgaatttgaatttgaata |
43380209 |
T |
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| Q |
313 |
tattcattacttggacaggaactagagtccaataatataccacttgctaatgttcgcctatgctactcc |
381 |
Q |
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| T |
43380210 |
tattcattatttggacaggaactagagtccaataatataccacttgctaatgttcgcatttgctactcc |
43380278 |
T |
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