View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_23 (Length: 353)
Name: NF3410_high_23
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 1830342 - 1830009
Alignment:
| Q |
20 |
ggcatgtccttgtcgtgttcgtgtccgtgcttcataggtctcaagccaacacactaggtcaaccaaatgggtttggaacaagcaacactactatcaaaat |
119 |
Q |
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| T |
1830342 |
ggcatgtccttgtcatgtccgtgtccgtgcttcataggtcccaagccaacacactaggtcaaccaaatgggtttggaacaagcaacactactatcaaaat |
1830243 |
T |
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| Q |
120 |
aatcataaaatgaaacgcatagatatgtctgtagaaaataataacaaatagaaaaacttgaactagttttccttgagtcaccaatgcataacaaagttaa |
219 |
Q |
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| T |
1830242 |
aatcataaaatgaaacgcatagatatgtctgtagaaaataataacaaatagaaaaacttgaactagttttccttgagtcaccaatgcataacaaagttaa |
1830143 |
T |
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| Q |
220 |
agaaaacataaacactgaaattcattaacaaaagaaagatttggttaattacctcttaatggctcggacaaggtcaagtgaagaagggtgtcgcatacgg |
319 |
Q |
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| T |
1830142 |
agaaaacataaacactgaaattcattaacaaaagaaagatttggttaattacctcttaatggctcggacgaggtcaagtgaagaagggtgtcgcatacgg |
1830043 |
T |
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| Q |
320 |
tggagaaaatcatggaaagacgttgatcttgatg |
353 |
Q |
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| T |
1830042 |
tggagaaaatcatggaaagacgttgatcttgatg |
1830009 |
T |
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