View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_24 (Length: 343)
Name: NF3410_high_24
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 24391544 - 24391858
Alignment:
| Q |
20 |
aaaccatggcaatgtttggtctttagattgaacgnnnnnnnncctactattacaatagtagcatgtatcataaatatcaaatgcatgttttagtgtgata |
119 |
Q |
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| T |
24391544 |
aaaccatggcaatgtttggtctttagattgaacgttttttt-cctactattacaatagtagcatgtatcataaatatcaaatgcatgttttagtgtgata |
24391642 |
T |
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| Q |
120 |
ttattgtttgtgcggaagttactaaatttaagagtgatgatcttatattatagtatatgtatggtaacatgaaaagtaactattaattttttgtttatct |
219 |
Q |
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| T |
24391643 |
ttattgtttgtgcggaagttactaaatttaagagtgatgatcttatattata---tatgtatggtaacatgaaaagtaactattaattttttgtttatct |
24391739 |
T |
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| Q |
220 |
tgatattacaactatcatggatacgttttggattattgtaagttggcaaatgtccatgaaaagagatagaacatcacattcttgttaaaaattatactaa |
319 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24391740 |
tgatattacaactaacatggatacattttggattattgtaagttggcatatgtccatgaaaagagatagaacatcacattcttgttaaacattatactaa |
24391839 |
T |
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| Q |
320 |
accattctttcttttctct |
338 |
Q |
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| T |
24391840 |
atcattctttcttttctct |
24391858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 49061365 - 49061397
Alignment:
| Q |
306 |
aaaaattatactaaaccattctttcttttctct |
338 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
49061365 |
aaaaattatactaaatcattctttcttttctct |
49061397 |
T |
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