View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_28 (Length: 318)
Name: NF3410_high_28
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 36373791 - 36373507
Alignment:
| Q |
19 |
ggatcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcct |
118 |
Q |
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| T |
36373791 |
ggatcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattacttcctcacaggcatcagcatttaacattctaccgcctttatgatcct |
36373692 |
T |
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| Q |
119 |
gttcttcatgatcatcgatactgtttgtcgttttcctttgaacaccttctttggattgtatagcttcccataaagttattaaacgcatatgctccttaca |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||| |
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| T |
36373691 |
gttcttcatgatcatcgatactgtttgtcgttttcttttgaacaccttctttggattgtatcgcttcccataaagttatcaaatccataagctccttaca |
36373592 |
T |
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| Q |
219 |
caaccgccttctcttaagcttctttgtgcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgat |
303 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373591 |
caaccgccttctcttaaacttctttgtgcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgat |
36373507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 32251706 - 32251813
Alignment:
| Q |
22 |
tcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgtt |
121 |
Q |
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||||||||||||||||| ||||| ||||| | ||||||| ||| |||| ||||| | |||||||||||| || ||||||||| |||||||||| |||| |
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| T |
32251706 |
tcttcttcagttggtagactatcgaaattcttcatgtaactatctattatttccttgcgggcatcagcattgaatgttctaccgcctttatgatcttgtt |
32251805 |
T |
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| Q |
122 |
cttcatga |
129 |
Q |
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|||||||| |
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| T |
32251806 |
cttcatga |
32251813 |
T |
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