View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3410_high_32 (Length: 285)

Name: NF3410_high_32
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3410_high_32
NF3410_high_32
[»] chr3 (4 HSPs)
chr3 (20-273)||(34464538-34464786)
chr3 (92-247)||(34479519-34479673)
chr3 (163-250)||(34370793-34370880)
chr3 (163-231)||(34528155-34528222)
[»] chr1 (1 HSPs)
chr1 (92-213)||(21988134-21988254)
[»] chr6 (1 HSPs)
chr6 (167-248)||(24472128-24472209)
[»] chr2 (2 HSPs)
chr2 (163-248)||(10535200-10535285)
chr2 (163-248)||(10528304-10528389)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 34464786 - 34464538
Alignment:
Q  20 tctccttattactttctctatatatgttttctcaaatgctttttcttctccctctactttttcagtttctgctttagcccaatgaatgccaaaattcttt 119  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34464786 tctccttattactttctctat----gttttctcaaatgctttttcttctccctctactttttcagtttctgctttagcccaatga-tgccaaaattcttt 34464692  T
Q  120 attatcatttgtctcaactcaatcaattttcaaaatattatttgaccaatgaatgtgtttcaagtgtcattcatttgtacaaccaaccgtttccattgaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34464691 attatcatttgtctcaactcaatcaattttcaaaatattatttgaccaatgaatgtgtttcaagtgtcattcatttgtacaaccaaccgtttccattgaa 34464592  T
Q  220 gttagtactatttcacaaagaccttcttggcatcacaatttcttagcttatttt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34464591 gttagtactatttcacaaagaccttcttggcatcacaatttcttagcttatttt 34464538  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 34479673 - 34479519
Alignment:
Q  92 tttagcccaatgaatgccaaaattctttattatcatttgtctcaactcaatcaattttcaaaatattatttgaccaatgaatgtgtttcaagtgtcattc 191  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||| ||||| |||||  ||| |||||||||||| ||||||||||| |||||| |||||    
T  34479673 tttagcctaatgaa-gccaaaattccttattatcatttgtctcaagtcaataaatttcgaaattattatttgaccgatgaatgtgttccaagtgccattc 34479575  T
Q  192 atttgtacaaccaaccgtttccattgaagttagtactatttcacaaagaccttctt 247  Q
    || ||||||||  ||||||||| ||||||   ||||||||||||||| ||||||||    
T  34479574 atctgtacaacttaccgtttcctttgaagagggtactatttcacaaataccttctt 34479519  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 34370793 - 34370880
Alignment:
Q  163 gaccaatgaatgtgtttcaagtgtcattcatttgtacaaccaaccgtttccattgaagttagtactatttcacaaagaccttcttggc 250  Q
    |||||||||||||||| |||||||  ||||| |||||||  ||||||| || ||||||| ||||||||||||||||| | ||||||||    
T  34370793 gaccaatgaatgtgttccaagtgttcttcatctgtacaagtaaccgttgcctttgaagtcagtactatttcacaaaggcgttcttggc 34370880  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 34528222 - 34528155
Alignment:
Q  163 gaccaatgaatgtgtttcaagtgtcattcatttgtacaaccaaccgtttccattgaagttagtactatt 231  Q
    |||||||||||||||| |||||||| ||||| |||||||  |||||||||| ||||||| |||||||||    
T  34528222 gaccaatgaatgtgttccaagtgtctttcatatgtacaagtaaccgtttcc-ttgaagtcagtactatt 34528155  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 21988134 - 21988254
Alignment:
Q  92 tttagcccaatgaatgccaaaattctttattatcatttgtctcaactcaatcaattttcaaaatattatttgaccaatgaatgtgtttcaagtgtcattc 191  Q
    ||||||||||||| | |||| |||  ||| |||||||| |||||| | ||| | |||| ||| |||||||||||||||||||||| | |||||||||||     
T  21988134 tttagcccaatga-taccaagatttcttaatatcatttatctcaagttaataagttttgaaattattatttgaccaatgaatgtgctccaagtgtcatta 21988232  T
Q  192 atttgtacaaccaaccgtttcc 213  Q
    | ||||||||| |||| |||||    
T  21988233 aattgtacaactaaccatttcc 21988254  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 24472128 - 24472209
Alignment:
Q  167 aatgaatgtgtttcaagtgtcattcatttgtacaaccaaccgtttccattgaagttagtactatttcacaaagaccttcttg 248  Q
    |||||||||||| ||||||| |||||| | |||||  ||  |||||| ||||||| | ||||||||||||||| ||||||||    
T  24472128 aatgaatgtgttccaagtgtaattcatctatacaagtaaatgtttcctttgaagtcaatactatttcacaaaggccttcttg 24472209  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 10535285 - 10535200
Alignment:
Q  163 gaccaatgaatgtgtttcaagtgtcattcatttgtacaaccaaccgtttccattgaagttagtactatttcacaaagaccttcttg 248  Q
    |||||||||||| ||| |||||||  ||||| | |||||  |||||||||| ||||||| |||||| ||||| |||| ||||||||    
T  10535285 gaccaatgaatgagttccaagtgttcttcatatatacaagtaaccgtttcctttgaagtcagtactttttcaaaaaggccttcttg 10535200  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 10528389 - 10528304
Alignment:
Q  163 gaccaatgaatgtgtttcaagtgtcattcatttgtacaaccaaccgtttccattgaagttagtactatttcacaaagaccttcttg 248  Q
    |||||||||||||||| |||||||   |||| | |||||  |||||||||| ||||| | |||||| ||||| |||| ||||||||    
T  10528389 gaccaatgaatgtgttccaagtgttcatcatctatacaagtaaccgtttcctttgaaatcagtactttttcaaaaaggccttcttg 10528304  T

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