View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3410_high_35 (Length: 278)

Name: NF3410_high_35
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3410_high_35
NF3410_high_35
[»] chr8 (2 HSPs)
chr8 (10-277)||(16911517-16911784)
chr8 (164-278)||(34794777-34794891)
[»] chr2 (1 HSPs)
chr2 (23-246)||(16411383-16411614)
[»] chr1 (8 HSPs)
chr1 (63-148)||(26154754-26154839)
chr1 (63-148)||(26168052-26168137)
chr1 (24-105)||(38302966-38303047)
chr1 (232-278)||(26154617-26154663)
chr1 (232-278)||(26167915-26167961)
chr1 (164-205)||(38303114-38303155)
chr1 (178-212)||(26154700-26154734)
chr1 (178-212)||(26167998-26168032)
[»] chr3 (1 HSPs)
chr3 (21-117)||(42182021-42182121)
[»] chr4 (1 HSPs)
chr4 (98-202)||(30332466-30332577)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 16911784 - 16911517
Alignment:
Q  10 aagaatatctacaatctaaattacaataggaacttattactacaactaattataatatgaatttattaggtcatctaattacaatctgaatttgaaacag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16911784 aagaatatctacaatctaaattacaataggaacttattactacaactaattataatatgaatttattaggtcatctaattacaatctgaatttgaaacgg 16911685  T
Q  110 cagatgatcataataatctattgaaattaatcaaacaaacatataatcttaatctgaagattgaaggtaacccaactcacaatgagaatgaaatggacga 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  16911684 cagatgatcataataatctattgaaattaatcaaacaaacatataatcttaatctgaagattgaaggtaacctaactcacaatgagaatgaaatggatga 16911585  T
Q  210 aaatagcagcaagatgaaaacatgagtccataacaacagcgagcagaaaagaatattgaacataacac 277  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16911584 aaacagcagcaagatgaaaacatgagtccataacaacagcgagcagaaaagaatattgaacagaacac 16911517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 34794777 - 34794891
Alignment:
Q  164 tgaagattgaaggtaacccaactcacaatgagaatgaaatggacgaaaatagcagcaagatgaaaacatgagtccataacaacagcgagcagaaaagaat 263  Q
    |||||||||| ||||| |||||||||||||||||  ||||||| ||||| ||| |||||| ||||||||||||||| |||||| |  |||||||||||||    
T  34794777 tgaagattgatggtaatccaactcacaatgagaacaaaatggatgaaaacagcggcaagacgaaaacatgagtccaaaacaacggtcagcagaaaagaat 34794876  T
Q  264 attgaacataacacc 278  Q
    |||||||| ||||||    
T  34794877 attgaacagaacacc 34794891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 16411614 - 16411383
Alignment:
Q  23 atctaaattacaataggaacttattactacaactaattataatatgaatttattaggtcatctaattacaatctgaatttgaaacagcagatgatcataa 122  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  16411614 atctaaattacaataggaacttataactacaactaattagagtatgaacttattaggtcatttaattacaatctgaatttgaaaccgcggatgatcataa 16411515  T
Q  123 taatctattgaaattaatc-aaacaaacatataatct-------taatctgaagattgaaggtaacccaactcacaatgagaatgaaatggacgaaaata 214  Q
    ||||||||| ||||||||| |||||| ||||| ||||       ||   |||||||| |||||||| |||||||||||||||| |||||||  ||||| |    
T  16411514 taatctattaaaattaatcaaaacaaccatatcatctatatgtatagaatgaagattcaaggtaactcaactcacaatgagaacgaaatggttgaaaaca 16411415  T
Q  215 gcagcaagatgaaaacatgagtccataacaac 246  Q
     |||| ||| | |||  |||||||| ||||||    
T  16411414 acagcgagacggaaatgtgagtccaaaacaac 16411383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 26154839 - 26154754
Alignment:
Q  63 aatatgaatttattaggtcatctaattacaatctgaatttgaaacagcagatgatcataataatctattgaaattaatcaaacaaa 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||  | ||||||  |||||||||||| ||||||||||||||||    
T  26154839 aatatgaatttattaggtcatctaattacaatctgaatttgaaacgacggatgattgtaataatctattaaaattaatcaaacaaa 26154754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 26168137 - 26168052
Alignment:
Q  63 aatatgaatttattaggtcatctaattacaatctgaatttgaaacagcagatgatcataataatctattgaaattaatcaaacaaa 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||  | ||||||  |||||||||||| ||||||||||||||||    
T  26168137 aatatgaatttattaggtcatctaattacaatctgaatttgaaacgacggatgattgtaataatctattaaaattaatcaaacaaa 26168052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 38302966 - 38303047
Alignment:
Q  24 tctaaattacaataggaacttattactacaactaattataatatgaatttattaggtcatctaattacaatctgaatttgaa 105  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||| || |||  ||||||||||||||||||||||||||    
T  38302966 tctaaattacaataggaacttattattacaactaattacaatatgaacttgttatttcatctaattacaatctgaatttgaa 38303047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 26154663 - 26154617
Alignment:
Q  232 tgagtccataacaacagcgagcagaaaagaatattgaacataacacc 278  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  26154663 tgagtccaaaacaacggcgagcagaaaagaatattgaacataacacc 26154617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 26167961 - 26167915
Alignment:
Q  232 tgagtccataacaacagcgagcagaaaagaatattgaacataacacc 278  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  26167961 tgagtccaaaacaacggcgagcagaaaagaatattgaacataacacc 26167915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 38303114 - 38303155
Alignment:
Q  164 tgaagattgaaggtaacccaactcacaatgagaatgaaatgg 205  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  38303114 tgaagattgaaggtaacctaactcacaatgagaacgaaatgg 38303155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 26154734 - 26154700
Alignment:
Q  178 aacccaactcacaatgagaatgaaatggacgaaaa 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  26154734 aacccaactcacaatgagaacgaaatggacgaaaa 26154700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 26168032 - 26167998
Alignment:
Q  178 aacccaactcacaatgagaatgaaatggacgaaaa 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  26168032 aacccaactcacaatgagaacgaaatggacgaaaa 26167998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 42182021 - 42182121
Alignment:
Q  21 caatctaaattacaataggaacttattactacaactaattataatatgaattt----attaggtcatctaattacaatctgaatttgaaacagcagatga 116  Q
    ||||||||||||||||| ||||||||||||||||||||||| | ||| || ||    |||| |||||||||||||||||||||||||||||| | |||||    
T  42182021 caatctaaattacaatatgaacttattactacaactaattacagtataaacttatagattatgtcatctaattacaatctgaatttgaaacaacggatga 42182120  T
Q  117 t 117  Q
    |    
T  42182121 t 42182121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 30332466 - 30332577
Alignment:
Q  98 aatttgaaacagcagatgatcataataatctattgaaattaatcaaacaaacatataatct-------taatctgaagattgaaggtaacccaactcaca 190  Q
    |||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||| |       ||   ||||||||| |||||| ||||||||||    
T  30332466 aatttgaaacggcagatgatcgtaataatttattaaaattaatcaaacaaacatataatttatatgtatagaatgaagattggaggtaatccaactcaca 30332565  T
Q  191 atgagaatgaaa 202  Q
    ||||||||||||    
T  30332566 atgagaatgaaa 30332577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University