View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3410_high_37 (Length: 259)

Name: NF3410_high_37
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3410_high_37
NF3410_high_37
[»] chr4 (7 HSPs)
chr4 (97-259)||(24391835-24391997)
chr4 (27-257)||(48779743-48779974)
chr4 (62-259)||(47077960-47078152)
chr4 (16-259)||(20251410-20251654)
chr4 (191-259)||(24129391-24129459)
chr4 (17-113)||(24129202-24129298)
chr4 (153-259)||(27538101-27538209)
[»] chr3 (6 HSPs)
chr3 (27-259)||(52653774-52654007)
chr3 (34-259)||(33709830-33710057)
chr3 (26-257)||(40574196-40574428)
chr3 (189-257)||(16729781-16729849)
chr3 (34-71)||(23686176-23686213)
chr3 (34-71)||(24058413-24058450)
[»] chr8 (5 HSPs)
chr8 (16-251)||(12729399-12729635)
chr8 (17-252)||(44729086-44729321)
chr8 (160-259)||(14546294-14546394)
chr8 (32-116)||(28696007-28696091)
chr8 (171-252)||(28696113-28696195)
[»] chr1 (8 HSPs)
chr1 (27-259)||(49061374-49061607)
chr1 (30-259)||(49053794-49054024)
chr1 (171-257)||(52282039-52282128)
chr1 (179-252)||(50059501-50059575)
chr1 (175-259)||(17458411-17458496)
chr1 (117-252)||(42263402-42263539)
chr1 (189-247)||(12634497-12634555)
chr1 (28-90)||(31286103-31286164)
[»] chr7 (6 HSPs)
chr7 (27-251)||(12239506-12239731)
chr7 (30-249)||(24870428-24870647)
chr7 (16-249)||(1840661-1840893)
chr7 (33-257)||(34091362-34091586)
chr7 (16-186)||(23757043-23757212)
chr7 (27-79)||(37469058-37469110)
[»] chr5 (6 HSPs)
chr5 (27-259)||(9851328-9851559)
chr5 (17-259)||(29006485-29006728)
chr5 (17-112)||(15205481-15205576)
chr5 (27-110)||(36203207-36203290)
chr5 (117-246)||(9080625-9080755)
chr5 (190-259)||(15205365-15205434)
[»] chr6 (2 HSPs)
chr6 (26-252)||(11931962-11932188)
chr6 (62-259)||(28612064-28612262)
[»] scaffold0007 (1 HSPs)
scaffold0007 (26-251)||(217757-217972)
[»] chr2 (3 HSPs)
chr2 (16-259)||(14218759-14219002)
chr2 (160-251)||(34681118-34681211)
chr2 (149-228)||(38327394-38327475)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 97 - 259
Target Start/End: Complemental strand, 24391997 - 24391835
Alignment:
Q  97 ccaatcggatgcaaaagggttataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcacatcacaccaaacgtatcgacaatgata 196  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391997 ccaaccggatgcaaaagggttataccggcgaatccccttcaagatacaatggaatccttggtgtgacttgcacatcacaccaaacgtatcgacaatgata 24391898  T
Q  197 gtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  24391897 gtttacagaataaagttatgtcaatttctctcatgcactagagaaaagaaagaatgatttagt 24391835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 48779743 - 48779974
Alignment:
Q  27 gtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcg 126  Q
    ||||| ||||||| |||||||||||||||| || |||||||||| ||||||||| ||||  ||||||| |||||| ||||||||||||| |||| ||| |    
T  48779743 gtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcctctgccagttatgccaattggatgcaaaaggg-tatatcggtg 48779841  T
Q  127 aatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttc 224  Q
    ||||||||||||||||| ||| |||| |||  |||||||||||| ||||||||| | |||| | ||||||||||||| ||||||||||||||||| |||     
T  48779842 aatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatcaatcaatgatagtttagagaataaagttatgtcagttta 48779941  T
Q  225 tctcatacactagagaaaagaaagaatggttta 257  Q
    | || | |||||||||||| || ||||| ||||    
T  48779942 tgtcgtgcactagagaaaataatgaatgattta 48779974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 259
Target Start/End: Original strand, 47077960 - 47078152
Alignment:
Q  62 taacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcgaatccccttcaggatacaatggaatccttggtgtg 161  Q
    |||||||||| ||| ||||  | |||||| ||| | |||||||||||||||||||  |   | | ||||||||| ||||||| ||||||||||||  |||    
T  47077960 taacctttagattctattcttccccaccaattatgtcaatcggatgcaaaagggtattt--gacaaatcccctttaggataccatggaatccttgacgtg 47078057  T
Q  162 acttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
    |||| |||| | |||||||||| ||   ||||| ||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||| ||||||    
T  47078058 acttacacatttacaccaaacg-at---caatgttagtttacagaataaagttctgtcaatttctctcgtacactacaaaaaagaaagaatgatttagt 47078152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 20251654 - 20251410
Alignment:
Q  16 catgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaaggg 115  Q
    ||||| ||| ||| |||||||||| |||||||||||| | |||| ||||  ||||| ||| |||  || | || ||| | | ||| |||||||||| |||    
T  20251654 catgatgaagagtacacataaatttcaaagcgtgtgtag-acacactaatatttagattccatttgcccctactagtaatgtcaaccggatgcaaagggg 20251556  T
Q  116 ttataccggcgaatcccc-ttcaggatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagt 212  Q
    | |||| || |||||||| |||||||||  || ||||| ||| |||| |||| |||| |||| |||  ||||||| ||||||||||||||| ||||||||    
T  20251555 t-atactggtgaatcccccttcaggatatgattgaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagt 20251457  T
Q  213 tatgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
    | |||||||||||||| | ||||| |||||||||| |||| ||||||    
T  20251456 tctgtcaatttctctcgtgcactacagaaaagaaataatgatttagt 20251410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 24129391 - 24129459
Alignment:
Q  191 atgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
    ||||||||||||| |||||||||||||||||||||  | | ||||||||||||||||||| | ||||||    
T  24129391 atgatagtttacataataaagttatgtcaatttcttccgtgcactagagaaaagaaagaaagatttagt 24129459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 24129202 - 24129298
Alignment:
Q  17 atgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaag 113  Q
    |||| ||||||||||||||||||||||||| |||| |||||||  ||| |||||  || ||||| || |||||||||| ||||| | |||| |||||    
T  24129202 atgatgaaaagtgcacataaattccaaagcatgtgcgggacacattaatctttaactttgattctcccccaccagttatgccaaccagatgtaaaag 24129298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 27538101 - 27538209
Alignment:
Q  153 cttggtgtgacttgcacatc-acaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaa 250  Q
    |||| ||||||||||||||  | || |||| |||||| ||||||  ||||||||||| ||||||||||||||||||| || || ||||||||  ||||||    
T  27538101 cttgatgtgacttgcacatttatactaaacatatcgatcaatgaccgtttacagaattaagttatgtcaatttctcttatgcattagagaaattaaagaa 27538200  T
Q  251 tggtttagt 259  Q
    || ||||||    
T  27538201 tgatttagt 27538209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 52654007 - 52653774
Alignment:
Q  27 gtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcg 126  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||  ||||||||| ||||| ||||||||||| |||||||||||||    
T  52654007 gtgcacataaattccaaagcgtgtgtgggacacactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaaaatggttataccggcg 52653908  T
Q  127 aatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttct 225  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||||| |||  |||||||||||| ||||||||||||||||||| |||||||||      
T  52653907 aatccccttcaggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcgacaatggtagtttacagaataaagttctgtcaattttc 52653808  T
Q  226 ctcatacactagagaaaagaaagaatggtttagt 259  Q
    ||| | ||||||||||||| ||||||| ||||||    
T  52653807 ctcgtgcactagagaaaagtaagaatgatttagt 52653774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 34 - 259
Target Start/End: Complemental strand, 33710057 - 33709830
Alignment:
Q  34 taaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggt-tataccggcgaatccc 132  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||| ||||||||| ||||||    
T  33710057 taaattccaaagcgtgtgtgggacacactaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaaaagggtatataccggctaatccc 33709958  T
Q  133 cttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttctctcata 231  Q
    ||| ||||||| || |||||||||  |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||  |     
T  33709957 ctttaggatacgatagaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttacagaataaagttctgtcaaattctctggtg 33709858  T
Q  232 cactagagaaaagaaagaatggtttagt 259  Q
    ||||||||||||||||||||| ||||||    
T  33709857 cactagagaaaagaaagaatgatttagt 33709830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 40574196 - 40574428
Alignment:
Q  26 agtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggc 125  Q
    |||||||||||||||  ||| || |||||||||| |||||||||| | | |||||||| |||||||| | |  ||| |||||||||| ||  ||| | ||    
T  40574196 agtgcacataaattctgaagtgtatgtgggacacactaacctttaagcttgattcacccccaccagtaatgttaattggatgcaaaatggc-atatcagc 40574294  T
Q  126 gaatccccttcaggatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaattt 223  Q
    ||||  |||||||||||| |||||||| |||  ||||||||||||| ||||| || |||||| | ||||||||||||||||||||||||| |||||||||    
T  40574295 gaattaccttcaggatactatggaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaattt 40574394  T
Q  224 ctctcatacactagagaaaagaaagaatggttta 257  Q
    ||||| | ||||||||||||||||||||| ||||    
T  40574395 ctctcgtgcactagagaaaagaaagaatgattta 40574428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 16729849 - 16729781
Alignment:
Q  189 caatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatggttta 257  Q
    ||||||||||||||| |||||||||||||||||||   || | ||||| | ||||||||||||| ||||    
T  16729849 caatgatagtttacaaaataaagttatgtcaattttcttcgtgcactaaataaaagaaagaatgattta 16729781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 23686213 - 23686176
Alignment:
Q  34 taaattccaaagcgtgtgtgggacacgctaacctttag 71  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  23686213 taaattcgaaaccgtgtgtgggacacgctaacctttag 23686176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 24058450 - 24058413
Alignment:
Q  34 taaattccaaagcgtgtgtgggacacgctaacctttag 71  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  24058450 taaattcgaaaccgtgtgtgggacacgctaacctttag 24058413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 12729635 - 12729399
Alignment:
Q  16 catgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaaggg 115  Q
    ||||| ||||||| ||||| |||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||    
T  12729635 catgatgaaaagtacacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggatgcaaaaggg 12729536  T
Q  116 ttataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagtta 214  Q
    |||||||||||| ||||||||||||||| ||| ||||||||   ||||||||||| ||||||||| | ||||||||||  |||||||| ||||||||||     
T  12729535 ttataccggcgattccccttcaggatacgatgaaatccttgacatgacttgcacattcacaccaagcatatcgacaattgtagtttactgaataaagttc 12729436  T
Q  215 tgtcaatttctctcatacactagagaaaagaaagaat 251  Q
    |||||||||||||| | ||||||||||||||||||||    
T  12729435 tgtcaatttctctcgtgcactagagaaaagaaagaat 12729399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 44729321 - 44729086
Alignment:
Q  17 atgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggt 116  Q
    |||| ||| ||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||| |  | ||||| ||||| ||||||||| |||||    
T  44729321 atgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcacccctgcgagttatgccaaccggatgcaagagggt 44729222  T
Q  117 tataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcga-caatgatagtttacagaataaagtta 214  Q
     |||||||||||||||||| |||||||| |||||||||||  |||||||||||| ||| ||||| |||||||| |||||||||||||||||||  |||      
T  44729221 aataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttacagaatgtagt-- 44729124  T
Q  215 tgtcaatttctctcatacactagagaaaagaaagaatg 252  Q
    ||||||| |||||| | |||||| |||| |||||||||    
T  44729123 tgtcaatctctctcgtgcactagggaaatgaaagaatg 44729086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 14546294 - 14546394
Alignment:
Q  160 tgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatggttta 257  Q
    |||||||||||| |||||||||| |||||| ||||| || |||||| | ||||||||||||||||||||| || || |||||||||||||||||| ||||    
T  14546294 tgacttgcacattcacaccaaac-tatcgatcaatggtactttacatactaaagttatgtcaatttctctgattcattagagaaaagaaagaatgattta 14546392  T
Q  258 gt 259  Q
    ||    
T  14546393 gt 14546394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 28696007 - 28696091
Alignment:
Q  32 cataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggt 116  Q
    |||||||||||||||||||||||||||| ||||| |||||||| ||||| ||  ||||||||| | ||| | |||||||||||||    
T  28696007 cataaattccaaagcgtgtgtgggacacactaacttttaggtttgattcgccctcaccagttatgtcaaccagatgcaaaagggt 28696091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 28696113 - 28696195
Alignment:
Q  171 tcacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatg 252  Q
    ||||||||| ||||| || |||||||| |||| ||||||||||| |||||||||  ||| | | || ||||||||||||||||    
T  28696113 tcacaccaagcgtattgatcaatgataatttatagaataaagttctgtcaattttcctcgtgccctggagaaaagaaagaatg 28696195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 49061607 - 49061374
Alignment:
Q  27 gtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcg 126  Q
    |||||||||||||| ||||||||||||||| || |||  ||||||||||||||| || |||||||||| |||||   |||||||||||||||||||| ||    
T  49061607 gtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggttcgattcgcccccaccagttatgccaactagatgcaaaagggttataccgacg 49061508  T
Q  127 aatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttct 225  Q
    |||||||||||| |||||||||||||||||  |||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||     
T  49061507 aatccccttcagaatacaatggaatccttgacgtgatttgcacattcacaccaaacatatcgacaatggtagtttacagaataaagttttgtcaatttcc 49061408  T
Q  226 ctcatacactagagaaaagaaagaatggtttagt 259  Q
    ||| | ||||||||||||||||||||| ||||||    
T  49061407 ctcgtgcactagagaaaagaaagaatgatttagt 49061374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 49054024 - 49053794
Alignment:
Q  30 cacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcgaat 129  Q
    |||||||||||||| |||||||||||| || |||||||||||||||||||| || ||||||||||  ||||  |||||||||||||||||||||||||||    
T  49054024 cacataaattccaatgcgtgtgtgggaaacactaacctttaggttcgattcgcccccaccagttataccaactggatgcaaaagggttataccggcgaat 49053925  T
Q  130 ccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttctctc 228  Q
    |||||||||||||||||| ||||||||  |||||||||||| ||||||||| | ||||||||||| ||||||||| ||||||||| || ||||||| |||    
T  49053924 ccccttcaggatacaatgaaatccttgacgtgacttgcacattcacaccaagcatatcgacaatggtagtttacaaaataaagttctgccaatttccctc 49053825  T
Q  229 atacactagagaaaagaaagaatggtttagt 259  Q
     | |||||||||| |||||||||| ||||||    
T  49053824 gtgcactagagaagagaaagaatgatttagt 49053794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 52282039 - 52282128
Alignment:
Q  171 tcacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatt--tctctcatacactagagaaaagaaagaatggttta 257  Q
    ||||||||| || ||||| ||||| ||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||    
T  52282039 tcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaagaaagaatgattta 52282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 50059575 - 50059501
Alignment:
Q  179 aacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatg 252  Q
    |||||||||| ||||||||||||| ||||||||||| ||| |||||||||| | |||||||||||| ||||||||    
T  50059575 aacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatg 50059501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 17458496 - 17458411
Alignment:
Q  175 accaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
    ||||| |||||||| ||||||||||||||| ||||||||||| || |||  |||| | ||||||||||| ||||||||| ||||||    
T  17458496 accaagcgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagt 17458411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 252
Target Start/End: Original strand, 42263402 - 42263539
Alignment:
Q  117 tataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagtta 214  Q
    |||| ||| ||||||||||||||||||  |  |||| |||   |||||||||||| || || || |||||||| ||||| || |||||| || ||||||     
T  42263402 tataacggtgaatccccttcaggatactttaaaatctttgacatgacttgcacattcatactaagcgtatcgaacaatgttaatttacaaaacaaagttt 42263501  T
Q  215 tgtcaatttctctcatacactagagaaaagaaagaatg 252  Q
    |||| ||||||||| | |||||||||||||||||||||    
T  42263502 tgtcgatttctctcgtgcactagagaaaagaaagaatg 42263539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 12634555 - 12634497
Alignment:
Q  189 caatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaa 247  Q
    ||||| || |||||||||||||||| ||||||||||||| || ||||| ||||||||||    
T  12634555 caatggtaatttacagaataaagttctgtcaatttctctaatgcactaaagaaaagaaa 12634497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 31286164 - 31286103
Alignment:
Q  28 tgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccacca 90  Q
    |||||||||||| ||||||||||||   |||||||||  |||||||| |||||||||||||||    
T  31286164 tgcacataaatttcaaagcgtgtgtaa-acacgctaaattttaggtttgattcacctccacca 31286103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 12239506 - 12239731
Alignment:
Q  27 gtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacg-ccaatcggatgcaaaagggttataccggc 125  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||||||||||| || |||||||||| | | || |||||||||||||| |||  ||||    
T  12239506 gtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcgattcgcccccaccagttatgtcaaaccggatgcaaaaggg-tatgtcggc 12239604  T
Q  126 gaatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttc 224  Q
    |||||||||||||||||| ||| ||||||||  |||||||||||| ||||||||| ||||||||||||| |||||| |||||||||||| |||||||||     
T  12239605 gaatccccttcaggatacgatgaaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttccagaataaagttttgtcaattta 12239704  T
Q  225 tctcatacactagagaaaagaaagaat 251  Q
    |||  || |||||||| ||||||||||    
T  12239705 tctagtatactagagataagaaagaat 12239731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 24870647 - 24870428
Alignment:
Q  30 cacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcgaat 129  Q
    ||||||||||||| | | ||| ||||||| ||||||||||| ||||||||| || | |||||||| ||||| |||||||||||||| |||   ||| |||    
T  24870647 cacataaattccacatcttgtatgggacatgctaacctttaagttcgattcgcccctaccagttatgccaaccggatgcaaaaggg-tat-gtggcaaat 24870550  T
Q  130 ccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttctct 227  Q
    || | | ||||||| |||  ||  |||  || |||| || | | ||||||| ||||| || ||||||||||||||| ||||||||| | ||||||| |||    
T  24870549 ccacattaggatactatgatattattgacgttactttcatatttacaccaagcgtattgatcaatgatagtttacataataaagttctatcaatttttct 24870450  T
Q  228 catacactagagaaaagaaaga 249  Q
    | | ||||||||||||||||||    
T  24870449 cgtgcactagagaaaagaaaga 24870428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 1840893 - 1840661
Alignment:
Q  16 catgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaaggg 115  Q
    ||||| |||||||| ||||||| || |||| |||||||| | || ||||||||||  || ||||| |||||| |||| | ||||| ||||||||||| ||    
T  1840893 catgatgaaaagtggacataaaatctaaagtgtgtgtggaatacactaacctttacatttgattcgcctccatcagtgatgccaaccggatgcaaaaagg 1840794  T
Q  116 ttataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagtt 213  Q
      ||||| || |||| ||||||  |||   |||||||||||  ||   |||||  | |||||||||  |||||| ||||||||||||||| ||||||| |    
T  1840793 a-ataccagcaaatctccttcaaaatattttggaatccttgacgtt--ttgcatgttcacaccaaatatatcgatcaatgatagtttacataataaagat 1840697  T
Q  214 atgtcaatttctctcatacactagagaaaagaaaga 249  Q
     |||||||||||||||| || | |||||||||||||    
T  1840696 ctgtcaatttctctcatgcatttgagaaaagaaaga 1840661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 257
Target Start/End: Original strand, 34091362 - 34091586
Alignment:
Q  33 ataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcgaatccc 132  Q
    ||||| |||||||| | ||||  |||| ||||| |||| ||| ||||||||||||||||||| | ||||||| |||||||  || || | ||| ||| ||    
T  34091362 ataaactccaaagcctatgtgtaacacactaacttttatgtttgattcacctccaccagttatgtcaatcggttgcaaaaaagt-at-ctggccaattcc 34091459  T
Q  133 cttcaggatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcgac-aatgatagtttacagaataaagttatgtcaatttctctcat 230  Q
     || || |||  || |||||||||  ||||||||||||| |||||||| |||||  |  |||| ||||||||| | ||||||| | ||||||||||||||    
T  34091460 ttttagaatattatagaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggtagtttacaaagtaaagttctctcaatttctctcat 34091559  T
Q  231 acactagagaaaagaaagaatggttta 257  Q
     || |||||||||||| ||||| ||||    
T  34091560 gcattagagaaaagaatgaatgattta 34091586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 23757043 - 23757212
Alignment:
Q  16 catgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaaggg 115  Q
    ||||| ||| |||| ||||||||||| |||  | |||| ||||  ||||| ||||||||||||||||| | |||| ||| || || | ||||||||||||    
T  23757043 catgatgaagagtgaacataaattccgaagtttatgtgtgacatactaacttttaggttcgattcacc-ctaccaattaagctaaccagatgcaaaaggg 23757141  T
Q  116 ttataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatc 186  Q
     ||||| ||||||||||||||| ||||  |||| | |||||  ||||| | |||| ||||||||||||||||    
T  23757142 -tatactggcgaatccccttcaagataatatgggacccttgacgtgacattcacattcacaccaaacgtatc 23757212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 37469110 - 37469058
Alignment:
Q  27 gtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgatt 79  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||    
T  37469110 gtgcacataaatttcaaagtgtgtgtgggacacactaacctttaggtttgatt 37469058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 259
Target Start/End: Original strand, 9851328 - 9851559
Alignment:
Q  27 gtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcg 126  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| || | |||||||| ||||| || ||||||||||| ||||||||||    
T  9851328 gtgcacataaattccaaagcgtgtgtgggacacactaacatttaggttcaattctcc-ctaccagttaagccaaccgaatgcaaaaggg-tataccggcg 9851425  T
Q  127 aatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttct 225  Q
    ||||||||||| ||||| ||||||| |||  ||||| ||||||| ||||||||| ||||||||||||| |  |||||||||||||||| |||||  ||||    
T  9851426 aatccccttcaagatacgatggaatacttaatgtgatttgcacattcacaccaagcgtatcgacaatggtgttttacagaataaagttttgtcacattct 9851525  T
Q  226 ctcatacactagagaaaagaaagaatggtttagt 259  Q
    ||  | |||||||||||||||||| || ||||||    
T  9851526 cttgtgcactagagaaaagaaagactgatttagt 9851559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 29006728 - 29006485
Alignment:
Q  17 atgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggt 116  Q
    |||| ||| |||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||| || |||| ||||    ||| | |||||||||||||    
T  29006728 atgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgcc-ccactagttttatcaaccagatgcaaaagggt 29006630  T
Q  117 tataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatag-tttacagaataaagtta 214  Q
    ||||  ||||||||| |||||| |||||||||||||||||   |||| | |||| ||||||||| ||||||| ||||| ||| ||||||||||||||||     
T  29006629 tatattggcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcgtatcgtcaatgttagttttacagaataaagttc 29006530  T
Q  215 tgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
    |||||| || |||| | ||||||| ||||||| ||||| ||||||    
T  29006529 tgtcaacttatctcgtgcactagaaaaaagaatgaatgatttagt 29006485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 15205576 - 15205481
Alignment:
Q  17 atgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaa 112  Q
    |||| ||| ||||| |||||||| ||||||||||||||||||| ||||| || |||||||||||  | |||||||||| ||| |  ||||||||||    
T  15205576 atgatgaagagtgcccataaatttcaaagcgtgtgtgggacacactaactttgaggttcgattcgtccccaccagttatgccgactggatgcaaaa 15205481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 36203290 - 36203207
Alignment:
Q  27 gtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaa 110  Q
    ||||||||||||| ||  ||||||||||| ||| |||||||||| |||||||||  | |||||||||| ||||| |||||||||    
T  36203290 gtgcacataaatttcatggcgtgtgtgggccacactaacctttaagttcgattcgtccccaccagttatgccaaccggatgcaa 36203207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 246
Target Start/End: Original strand, 9080625 - 9080755
Alignment:
Q  117 tataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagtta 214  Q
    ||||||| |||| |||||||| |||||  |||||| ||||  || |||||||||| ||||  |||||||| || ||||| ||||||||| |||||||||     
T  9080625 tataccgacgaa-ccccttcatgatactttggaattcttgacgtaacttgcacattcacattaaacgtatagatcaatggtagtttacaaaataaagttc 9080723  T
Q  215 tgtcaatttctctcatacactagagaaaagaa 246  Q
    | |||||| ||||| |  ||||||||||||||    
T  9080724 tctcaattgctctcgtgtactagagaaaagaa 9080755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 15205434 - 15205365
Alignment:
Q  190 aatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
    |||||||||||| |||||||||| |||| |||||||||  | ||||| |||||||| | |||| ||||||    
T  15205434 aatgatagtttagagaataaagtcatgttaatttctcttgttcactaaagaaaagatacaatgatttagt 15205365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 11932188 - 11931962
Alignment:
Q  26 agtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggc 125  Q
    |||||||||||||| |||||| ||||| |||||| |||||||||||||| ||||| || |||| ||||| ||||| ||||||||||||||||||||| ||    
T  11932188 agtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaaaagggttataccagc 11932089  T
Q  126 gaatccccttcaggatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttc 224  Q
    ||| |||||||||||||| ||| |||||||| ||||||||||  | |||||||||   ||||||||||| ||||||| |||||||| || |||||| |||    
T  11932088 gaa-ccccttcaggatacgatgaaatccttgatgtgacttgcttattcacaccaagtttatcgacaatggtagtttatagaataaaattctgtcaaattc 11931990  T
Q  225 tctcatacactagagaaaagaaagaatg 252  Q
    |||| | ||||||| |||||||||||||    
T  11931989 tctcgtgcactagataaaagaaagaatg 11931962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 62 - 259
Target Start/End: Original strand, 28612064 - 28612262
Alignment:
Q  62 taacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggcgaatccccttcaggatacaatggaatccttggtgtg 161  Q
    ||||||||||||||||||   | |||||||||| | |||  | ||| |||| ||| ||| ||||||||||||||||| |||||||||||||||||  |||    
T  28612064 taacctttaggttcgatttttccccaccagttatgtcaacagtatgtaaaatggt-atatcggcgaatccccttcagaatacaatggaatccttgacgtg 28612162  T
Q  162 acttgcaca-tcacaccaaacgtatcg-acaatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
    ||||| ||| ||||||||| | |||||  ||||| |||| |||| || || ||| |||||||| | ||| | ||||||||| ||||||||||| ||||||    
T  28612163 acttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcactagagataagaaagaatgatttagt 28612262  T

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Target: scaffold0007 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 217972 - 217757
Alignment:
Q  26 agtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaagggttataccggc 125  Q
    ||||||||||||||||||||  |||||||||||  ||| |||||||| ||||||| || ||||||| || ||||| | ||| ||||||||| ||||||||    
T  217972 agtgcacataaattccaaag--tgtgtgggacaaacta-cctttaggatcgattctcccccaccagctatgccaacctgatacaaaagggt-ataccggc 217877  T
Q  126 gaatccccttcaggatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaattt 223  Q
    |||||         |||| ||| ||||||||  | ||||||||||| ||||||||  ||||||| ||||| ||||||||| ||||| ||| || ||||||    
T  217876 gaatca--------atacgatgaaatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaattt 217785  T
Q  224 ctctcatacactagagaaaagaaagaat 251  Q
    ||||| |  |||||||||||||||||||    
T  217784 ctctcgtgaactagagaaaagaaagaat 217757  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 14218759 - 14219002
Alignment:
Q  16 catgaagaaaagtgcacataaattccaaagcgtgtgtgggacacgctaacctttaggttcgattcacctccaccagttacgccaatcggatgcaaaaggg 115  Q
    ||||| || |||||||||||||||  |||| ||||||  ||||  ||||| ||||||||||||||  | |||||||||| | |||  ||||||||||| |    
T  14218759 catgatgacaagtgcacataaatttaaaagtgtgtgttagacaaactaacttttaggttcgattcgtc-ccaccagttatgtcaactggatgcaaaagag 14218857  T
Q  116 ttataccggcgaatccccttcaggatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagtt 213  Q
    | ||| |   ||||| |||||| ||||| || |||||  ||   |||| || |||| ||||||||||||||| | ||||||||||||||| |||||||||    
T  14218858 t-atatcaatgaatctccttcaagatactatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagtt 14218956  T
Q  214 atgtcaatttctctcatacactagagaaaagaaagaatggtttagt 259  Q
     | |||||||  ||| | ||||||||||||||||||||| ||||||    
T  14218957 ctttcaattttcctcgtgcactagagaaaagaaagaatgatttagt 14219002  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 34681118 - 34681211
Alignment:
Q  160 tgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctcatacactagagaaaagaaagaat 251  Q
    |||||||||||| |||| ||| |||||||| ||||||||||||||  ||||||||| |||||||||||||| | ||| ||||||||||||||||    
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcaccagagaaaagaaagaat 34681211  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 38327394 - 38327475
Alignment:
Q  149 aatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctc 228  Q
    ||||||||  ||||||| ||||| ||||||||||| ||||| ||||| || |||||| ||||||||| || |||||||||||    
T  38327394 aatccttgacgtgacttacacattcacaccaaacgcatcgatcaatggtaatttacataataaagttttggcaatttctctc 38327475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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