View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_39 (Length: 250)
Name: NF3410_high_39
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 49647421 - 49647181
Alignment:
| Q |
1 |
ccatggaaattgtactttggctgttcgaggtggagtggttccagtgctgcttcaagttgttcagagcactgataataacaatgaggatttagctggaaca |
100 |
Q |
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| T |
49647421 |
ccatggaaattgtactttggctgttcgaggtggagtggttccggtgctgcttcaagttgttcagagcactgataataacaatgaggatttagctggaaca |
49647322 |
T |
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| Q |
101 |
tctcttactgttcttggtctgcttgtgaggtttgatgaagggttgaatgcagtgaagaaaacaaatgagataataagttcaatgttaagtgcgttaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49647321 |
tctcttactgttcttggtctgcttgtgaggtttgatgaagggttgaatgcagtgaagaaaacaaatgagataataagttcaatgttaagtgcgttaagaa |
49647222 |
T |
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| Q |
201 |
gaaggtctttgttgtgtaaggaaggtgcagttgatattctt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
49647221 |
gaaggtctttgttgtgtaaggaaggtgcagttgatattctt |
49647181 |
T |
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