View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_40 (Length: 250)
Name: NF3410_high_40
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 12323366 - 12323133
Alignment:
| Q |
13 |
aatattcgatagtcagtgaggcatatagcgaatttggaaatat----ggatcttttt-gtctacatatggggccttttttgtttataaaaactaatgaac |
107 |
Q |
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| T |
12323366 |
aatattcgatagtcagtgaggcatacagcaaatttggaaatatatatggatcttttttgtctacat--ggggccttttttgtttataaaaactaatgaac |
12323269 |
T |
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| Q |
108 |
aataaattttcgttggtaggcttaaaactagggttttaatagccttacccttaagtcgatcctaaagttagaatagccttgtgatatcttatataaacat |
207 |
Q |
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| T |
12323268 |
aataaattttcattggtggacttaaaattaggattttagtagccttacccttaggtcgatcctaaagttagaatagactcgtgataacttatataaacat |
12323169 |
T |
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| Q |
208 |
ccttaagtaaagcacgagtaaattgtaaatatataa |
243 |
Q |
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| T |
12323168 |
ccttaagtaaagcacgagtaaattgtaaatatataa |
12323133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 47442428 - 47442530
Alignment:
| Q |
60 |
ctttttgtctacatatggggccttttttgtttataaaaactaatgaacaataaattttcgttggtaggcttaaaactagggttttaatagccttaccctt |
159 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||| || || ||||||||| |||||| | | |||| ||| || |||| | ||||||||||| |
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| T |
47442428 |
ctttgtgtctgcatatggggccttttttctttataaaaacgaaagacagataaatttttgttggtggacctaaagctatggctttagtggccttaccctt |
47442527 |
T |
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| Q |
160 |
aag |
162 |
Q |
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||| |
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| T |
47442528 |
aag |
47442530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 40745301 - 40745228
Alignment:
| Q |
81 |
cttttttgtttataaaaactaatgaacaataaattttcgttggtaggcttaaaactagggttttaatagcctta |
154 |
Q |
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| T |
40745301 |
cttttttgtttataaaatctaatgaaaaatatttttttgttggaaggcctaaaacgagagttttagtagcctta |
40745228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 39104105 - 39104180
Alignment:
| Q |
83 |
tttttgtttataaaaactaatgaacaataaattttcgttggtaggcttaaaactagggttttaatagccttaccctt |
159 |
Q |
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||||||||||||||| ||||||| |||| |||| |||||||||| |||| | |||| |||| ||||||||||||| |
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| T |
39104105 |
tttttgtttataaaatataatgaaaaatatttttt-gttggtaggcctaaagcgagggctttagtagccttaccctt |
39104180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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