View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_high_50 (Length: 238)
Name: NF3410_high_50
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_50 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 983128 - 982921
Alignment:
| Q |
14 |
agtagcataggcaccatgagcaacaacataccttaaatccaatttggccaactcaacctcccattcttctctaggcctttttgtctcattggtgtttctt |
113 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
983128 |
agtaccataagcaccatgagcaacaacataccttaaatccaatttggccaactcaacctcccattcttctctaggcctttttgtctcattggtgtttctt |
983029 |
T |
|
| Q |
114 |
gaccaaacccggcttaagtgcttttccaattgagcatccaaattcttgagatcaattctatcagctctgaaaatcatatctttactgctttggtttccag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
983028 |
gaccaaacccggcttaagtgcttttccaattgagcatccaaattcttgagatcaattctatcagctctgaaaatcatatctttactgctttggtttccag |
982929 |
T |
|
| Q |
214 |
cacccttc |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
982928 |
cacccttc |
982921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 46734091 - 46734025
Alignment:
| Q |
146 |
agcatccaaattcttgagatcaattctatcagctctgaaaatcatatctttactgctttggtttcca |
212 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
46734091 |
agcatccaagttcttcagatcaattctatcagctctgaaaatcatatctttactgcttagatttcca |
46734025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University