View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_51 (Length: 238)
Name: NF3410_high_51
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21378513 - 21378736
Alignment:
| Q |
1 |
ttgcacaccatcctcattaatatattttttacattaattctcttttgagtaataaaacgaggatcacacattcattctcagacaagtttctctagcnnnn |
100 |
Q |
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| T |
21378513 |
ttgcacaccatcctcattaatatattttttacattaattctcttttgagtaataaaacgaggatcacacattcattctcagacaagtttctctagctttt |
21378612 |
T |
|
| Q |
101 |
nnnnctttccaaataaaggtgtaagattagtatgaagaaaatattgttgtgtgcacgatatatttatcaaataaaaattgaatattgagtttgatacttg |
200 |
Q |
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| T |
21378613 |
tttttctttcaaataaaggagtaagattagtatgaagaaaatattgttgtgtgcacgatgtatttatcaaataaaaattgaatattgagtttgatactta |
21378712 |
T |
|
| Q |
201 |
a---tacttatttggactttggtt |
221 |
Q |
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| |||||||||||||||||||| |
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| T |
21378713 |
atagtacttatttggactttggtt |
21378736 |
T |
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