View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_high_53 (Length: 237)
Name: NF3410_high_53
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_53 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 49647402 - 49647621
Alignment:
| Q |
1 |
ccaaagtacaatttccatggaattgaacaagttcagccaaagaactcaaaaggtgatgtgaatcggcagaatcaagaagagaactttcaatggccttcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49647402 |
ccaaagtacaatttccatggaattgaacaagttcagccaaagaactcaaaaggtgatgtgaatcggcagaatcaagaagagaactttcaatggccttcac |
49647501 |
T |
|
| Q |
101 |
cagcaactgaacagtacctgctaccccaaatttggctttgtttttatcaaacatggccaaactgcaaatcaatgaggaggcaagtttgcatgaatcaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49647502 |
cagcaactgaacagtacctgctaccccaaatttggctttgtttttatcaaacatggccaaactgcaaatcaatgaggaggcaagtttgcatgaatcaatg |
49647601 |
T |
|
| Q |
201 |
gaacatgatgatgagttaat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49647602 |
gaacatgatgatgagttaat |
49647621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University