View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_high_54 (Length: 236)
Name: NF3410_high_54
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45287764 - 45287981
Alignment:
| Q |
1 |
aaatattgatttgttagaggttagtattgcaaaatacggagtgtttgtatatttattgagagtggaagactgaaaatacattgtccataggaagattttg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45287764 |
aaatattgatttgtttgaggttagtattgcaaaatacggagtgtttgtatatt-attgagagtggaagactgaaaatacattgtccataggaagattttg |
45287862 |
T |
|
| Q |
101 |
caagtctcccgtgtagtgtttttcannnnnnnnnnaattatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaact |
200 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45287863 |
cacgtctcccgtgtagtgtttttcattttttttt--attatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaact |
45287960 |
T |
|
| Q |
201 |
caatcatataattgaagaagc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45287961 |
caatcatataattgaagaagc |
45287981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 45287499 - 45287708
Alignment:
| Q |
3 |
atattgatttgttagaggttagtattgcaaaatacggagtgtttgtatatt--tattgagagtggaagactgaaaatacattgtccataggaagattttg |
100 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||| ||||||||||||||| || |||||||||||||||||||||||| | | || |||||||||||| |
|
|
| T |
45287499 |
atattgatttgtttgaggttagcattgaaaaata--gagtgtttgtatattattaatgagagtggaagactgaaaatacactattcagaggaagattttg |
45287596 |
T |
|
| Q |
101 |
caagtctcccgtgtagtgtttttcannnnnnnnnnaattatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaact |
200 |
Q |
| |
|
| | |||| |||||||||||| || | ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
45287597 |
ta-gcctcctgtgtagtgttttacattgttttt--atttatttattcagggccatgaatttatatctattttgcatattttcttcaatatttagttaact |
45287693 |
T |
|
| Q |
201 |
caatcatataattga |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45287694 |
caatcatataattga |
45287708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31609029 - 31608814
Alignment:
| Q |
1 |
aaatattgatttgttagaggttagtattgcaaaatacggagtgtttgtatatttattgagagtggaagactgaaaatacattgtccataggaagattttg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
31609029 |
aaatattgatttgtttgaggttagtattgcaaaatacggagtgtttgtatatt-attgagagtggaa--ctgaaaatacattgtccataggaatattttg |
31608933 |
T |
|
| Q |
101 |
caagtctcccgtgtagtgtttttcannnnnnnnnnaattatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaact |
200 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31608932 |
caagtcacccgtgtagtgtttttcattttttttt--attatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaact |
31608835 |
T |
|
| Q |
201 |
caatcatataattgaagaagc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31608834 |
caatcatataattgaagaagc |
31608814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 31609295 - 31609086
Alignment:
| Q |
3 |
atattgatttgttagaggttagtattgcaaaatacggagtgtttgtatatt--tattgagagtggaagactgaaaatacattgtccataggaagattttg |
100 |
Q |
| |
|
||||||||||||| ||| |||| |||| |||||| ||||| ||||||||| || |||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
31609295 |
atattgatttgtttgagattagcattgaaaaata--gagtgattgtatattattaatgagagtggaagactgaaaatacactatccagaggaagattttg |
31609198 |
T |
|
| Q |
101 |
caagtctcccgtgtagtgtttttcannnnnnnnnnaattatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaact |
200 |
Q |
| |
|
| | ||||||||||||||||| || | ||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
31609197 |
ta-gcctcccgtgtagtgttttacattgttttt--atttatttattcagggccatgaatttatatctatttttcatattttcttcaatatttagttaact |
31609101 |
T |
|
| Q |
201 |
caatcatataattga |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31609100 |
caatcatataattga |
31609086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 12630600 - 12630677
Alignment:
| Q |
3 |
atattgatttgttagaggttagtattgcaaaatacggagtgtttgtatatt--tattgagagtggaagactgaaaataca |
80 |
Q |
| |
|
||||||||||||| |||||||| |||| || ||| ||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
12630600 |
atattgatttgtttgaggttagcattgaaatata--gagtgtttgtatattattaatgagagtggaagactgaaaataca |
12630677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University