View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_58 (Length: 231)
Name: NF3410_high_58
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 21143497 - 21143294
Alignment:
| Q |
18 |
agatcttcaatagaaggaccattagaatcactaaaaaatgagaacttcttctcgacgagttttccagggacaaaatgatcaatagagtgatcaccatgaa |
117 |
Q |
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| T |
21143497 |
agatcttcaatagaaggaccattagaatcactaaaaaacgagaacttcttctcgacgagttttccagggacaaaatgatcaatagagtgatcaccatgaa |
21143398 |
T |
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| Q |
118 |
ttatattaactggatcctttggcaataagttaaagctttttataagcttttcagctcgttggtttggtgaaaattttggtgttgatgaaaaactatgatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21143397 |
ttatattaactggatcctttggcaataagttaaagctttttataagcttttcagctcgttggtttggtgaaaattttggtgttgatgaaaaactatgatg |
21143298 |
T |
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| Q |
218 |
atgt |
221 |
Q |
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|||| |
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| T |
21143297 |
atgt |
21143294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 21123574 - 21123401
Alignment:
| Q |
18 |
agatcttcaatagaaggaccattagaatcactaaaaaatgagaacttcttctcgacgagttttccagggacaaaatgatcaatagagtgatcaccatgaa |
117 |
Q |
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||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||| || | ||||||||||| ||| ||||||||||||| |
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| T |
21123574 |
agatcctcaatagaaggaccaccagaatcaccgaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaagagaatgatcaccatgaa |
21123475 |
T |
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| Q |
118 |
ttatattaactggatcctttggcaataagttaaagctttttataagcttttcagctcgttggtttggtgaaaat |
191 |
Q |
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| T |
21123474 |
ttacattaactgattgctttgggaataagttgaagcttcttataagcttttcagcttgttgatttggtgaaaat |
21123401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 21149302 - 21149136
Alignment:
| Q |
24 |
tcaatagaaggaccattagaatcactaaaaaatgagaacttcttctcgacgagttttccagggacaaaatgatcaatagagtga-tcaccatgaattata |
122 |
Q |
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||||||||| | |||| ||||| || |||||| |||||||| ||||| |||| |||||||||||||||| ||||| || || | |||||| || || |
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| T |
21149302 |
tcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaag-gacagaatgaccatgtatcatc |
21149204 |
T |
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| Q |
123 |
ttaactggatcctttggcaataagttaaagctttttataagcttttcagctcgttggtttggtgaaaa |
190 |
Q |
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||||| |||| |||||| |||||||||| |||| | || |||||||| |||||||| ||||||||||| |
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| T |
21149203 |
ttaaccggattctttgggaataagttaaggcttctaatgagcttttctgctcgttgatttggtgaaaa |
21149136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 21113775 - 21113645
Alignment:
| Q |
37 |
cattagaatcactaaaaaatgagaacttcttctcgacgagttttccagggacaaaatgatcaatagagtgatcaccatgaattatattaactggatcctt |
136 |
Q |
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|||||| || ||| ||||| |||||||||||||| || | |||||||||| ||| ||||| || |||| ||||| |||| ||||||||||||||| |
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| T |
21113775 |
cattagtattacttaaaaaggagaacttcttctctacaatctttccaggga---aataatcaaaggactgattgccatgtattagattaactggatcctt |
21113679 |
T |
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| Q |
137 |
tggcaataagttaaagctttttataagcttttca |
170 |
Q |
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||| |||||||||||||| ||| |||||||||| |
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| T |
21113678 |
tggggataagttaaagcttcttacaagcttttca |
21113645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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