View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_high_9 (Length: 541)
Name: NF3410_high_9
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 63 - 531
Target Start/End: Original strand, 7192810 - 7193289
Alignment:
| Q |
63 |
ttagaatatgggttgatgaaaacatgcgtgtttcttgaatatag-tataaaatattagaacttgtttttgtcttgaccatctgattctcatcaagggatt |
161 |
Q |
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| T |
7192810 |
ttagaatatgggttgatgaaaacatgcatgtttcttgaatatatatataaaatattagaacttgtttttgtcttgatcatctgattctcatgaagggatt |
7192909 |
T |
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| Q |
162 |
acgatttacgaaccttcatgttctagagtctggttgagattaactaagtctggtcattgattattttagttagtattcgaactttaattttttctaaaga |
261 |
Q |
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| T |
7192910 |
acgatttacgaaccttgatgttctagagtccggttgagattaactaagtctggtcattgattactttagttagtatttgaactttaattttttctaaaga |
7193009 |
T |
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| Q |
262 |
ttcgtctaagcttattaaaccacttgaaccctactacc----tacctactacttagttcttttatcacgattaattttaagaac------nnnnnnnnng |
351 |
Q |
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| T |
7193010 |
ttcgtctaagcttattaaaccacttgaaccctactacctacgtacctactacttagttcttttatcacgattaattttaagaactttttttttttttttg |
7193109 |
T |
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| Q |
352 |
ataaagaaagaactaattttacttacaattaatttgtataaaatcttggaatcttaaagccaatcagtacctggacgaaagagttcatggcatagctagt |
451 |
Q |
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| T |
7193110 |
ataaagaaagaactaattttacttacaattaatttgtataaaatcttggaatcttaaagccaatcagtacctggacgaaagagttcatggcatagctagt |
7193209 |
T |
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| Q |
452 |
ttcgccagctcctttattcatgtgaagtgtttctacagtttccattttcttttcttattggacagatgagaaggtgatga |
531 |
Q |
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| T |
7193210 |
ttcgccagctcctttattcatgtgaagtgtttctacagtttccattttcttttcttattggacagatgagaaggtgatga |
7193289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 418 - 507
Target Start/End: Original strand, 7179811 - 7179900
Alignment:
| Q |
418 |
gtacctggacgaaagagttcatggcatagctagtttcgccagctcctttattcatgtgaagtgtttctacagtttccattttcttttctt |
507 |
Q |
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| T |
7179811 |
gtacctggaggaaagagttcatggcatagctagtttcgtcaactcctttgttcatgtgaagtgtttccacagtttccattttcttttctt |
7179900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 7179720 - 7179779
Alignment:
| Q |
249 |
ttttttctaaagattcgtctaagcttattaaaccacttgaaccctactacctacctacta |
308 |
Q |
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| T |
7179720 |
ttttctctgaagatttgtctaagtttattaaaccagttgaaccctactacgtacctacta |
7179779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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