View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_low_12 (Length: 495)
Name: NF3410_low_12
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_12 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32827068 - 32826829
Alignment:
| Q |
1 |
tcaaagtttgtcagcaaagactttgaagaaattgatgctatgatagatgaggacattgttgctgcaattgacagagttttattagaagggattacatttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32827068 |
tcaaagtttgtcagcaaagactttgaagaaattgatgctatgatagatgaggacgttgttgctgcaattgacagagttttattagaagggattacttttc |
32826969 |
T |
|
| Q |
101 |
ccttaaaatctcggcattttgtacaaggacaagaagcatcgaaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaa |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32826968 |
ccttaaaatctcggcattctgtacaaggacaacaagcctcgaaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaa |
32826869 |
T |
|
| Q |
201 |
agaggacttggttgaaaaatttaaaggtcttctttctcta |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32826868 |
agaggacttggttgaaaaatttaaaggtcttctttctcta |
32826829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 317 - 474
Target Start/End: Complemental strand, 32826806 - 32826653
Alignment:
| Q |
317 |
tcggtgttgttgttagctttctcaacaacattgtgaggattttgagaaactcgacaatttggaagnnnnnnnnngagcacgactcggttaagaaaaacat |
416 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
32826806 |
tcggtgttgttgttagctttcccaacaacattgtgaggattttgagaaactcgacaatttgaaa----aaaaaagagcacgactcggttaagaaaaacat |
32826711 |
T |
|
| Q |
417 |
tggccaaaataatgaagcgttgaaggaaagtgcgcacacacccaacaaatggacccaa |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
32826710 |
tggccaaaataatgaagcgttgaaggaaagtgcgcatacacccaacaaatggacccaa |
32826653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 9e-62; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 39737510 - 39737865
Alignment:
| Q |
1 |
tcaaagtttgtcagcaaagactttgaagaaattgatgctatgatagatgaggacattgttgctgcaattgacagagttttattagaagggattacatttc |
100 |
Q |
| |
|
||||| || ||||||| ||||| ||||||| ||||||||||| |||||||||| | |||| ||||||||||||||||||| ||||||||||| || |
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| T |
39737510 |
tcaaaattagtcagcatagactctgaagaatttgatgctatggtagatgaggatgtcattgcggcaattgacagagttttatcggaagggattactcttt |
39737609 |
T |
|
| Q |
101 |
ccttaaaatctcggcattttgtacaaggacaagaagcatcgaaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaa |
200 |
Q |
| |
|
|||||||||| | ||||| ||| ||||||| |||| || |||| |||||||| ||| |||||||||| |||||||||| |||||||| || ||||| |
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|
| T |
39737610 |
ccttaaaatcccagcattctgtccaaggacgagaatactcaaaacgggatcccaatctccctgagcaacttcttcaggaattaagggatattgcttttaa |
39737709 |
T |
|
| Q |
201 |
agaggacttggttgaaaaatttaaaggtcttctttc-tctagaagttaacttcaacacagtcaaagaaaaaattgacgatagtgctgacgcgttttcctc |
299 |
Q |
| |
|
|| ||||||||||||||| |||||| ||| | |||| ||||||| |||||| ||||||| ||||||||||||| || |||||| || |||||||| |
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| T |
39737710 |
aggagacttggttgaaaaacttaaagaaggtctcacttcta-aagttaatttcaacgcagtcaaggaaaaaattgacgctaatgctgatgcattttcctc |
39737808 |
T |
|
| Q |
300 |
tgaccaattagaacaagtcggtgttgttgttagctttctcaacaacattgtgaggat |
356 |
Q |
| |
|
| |||||||||||||||||||| |||||||| | |||||||||||||||||||||| |
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|
| T |
39737809 |
tctccaattagaacaagtcggtgctgttgttaaccttctcaacaacattgtgaggat |
39737865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 39856580 - 39856231
Alignment:
| Q |
7 |
tttgtcagcaaagactttgaagaaattgatgctatgatagatgaggacattgttgctgcaattgacagagttttattagaagggattacatttcccttaa |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| || |||||||| |||| |||||||||||| || |||||| |
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|
| T |
39856580 |
tttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaagggattactctttccttaa |
39856481 |
T |
|
| Q |
107 |
aatctcggcattttgtacaaggacaagaagcatcgaaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaaagagga |
206 |
Q |
| |
|
|||||| |||| ||| ||| |||||||| ||||| || ||||||||| || ||||||||| || |||||||||||||||||| |||||||| || |
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|
| T |
39856480 |
aatctcaccattctgttcaaaaacaagaagtctcgaagctggatcccaacttccaagagcaacttcttatggaattgagggatatcgcttttaaagaaga |
39856381 |
T |
|
| Q |
207 |
cttggttgaaaaatttaaaggtcttctttctctagaagttaacttcaacacagtcaaagaaaaaattgacgatagtgctgacgcgttttcctctgaccaa |
306 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||||||| | || || |||| ||| || ||| ||||| |
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|
| T |
39856380 |
cttggttgaaaaatttaaacaaggtctcactcctaaagttagtttcaacacagtcatggaaaaaattgaagctaatgttgacatgttctcttctcaccaa |
39856281 |
T |
|
| Q |
307 |
ttagaacaagtcggtgttgttgttagctttctcaacaacattgtgaggat |
356 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| ||||||| |||||| |
|
|
| T |
39856280 |
ctagaacaagtcggtgttgttgttaaccttgtcaagaacattgcgaggat |
39856231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 26 - 377
Target Start/End: Complemental strand, 39863763 - 39863408
Alignment:
| Q |
26 |
aagaaattgatgctatgatagatgaggacattgttgctgcaattgacagagttttattagaagggattacatttcccttaaaatctcggcattttgtaca |
125 |
Q |
| |
|
|||| |||||||||||||||| |||||| || |||||||||| |||| |||||||| ||||||| ||| || | ||| ||| || ||||| ||| || |
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|
| T |
39863763 |
aagatattgatgctatgataggtgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcagcattctgttca |
39863664 |
T |
|
| Q |
126 |
aggacaagaagca-tcg--aaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaaagaggacttggttgaaaaattt |
222 |
Q |
| |
|
||||||||||| ||| ||||| ||||||| |||| | |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39863663 |
aggacaagaagaggtcgcaaaactggatcccagcctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaaatta |
39863564 |
T |
|
| Q |
223 |
aaaggtcttctttctctagaagttaacttcaacacagtcaaagaaaaaattgacgatagtgctgacgcgttttcctctgaccaattagaacaagtcggtg |
322 |
Q |
| |
|
|||| | | |||| ||||||||||||| |||||||| ||||||||||| | || ||||||||| || | ||| |||||||||||||| |||| |
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|
| T |
39863563 |
aaagaaggtatctctcctaaagttaacttcaatacagtcaaggaaaaaattgatgctaatgctgacgctttcacgtctcgtcaattagaacaagttggtg |
39863464 |
T |
|
| Q |
323 |
ttgttgttagctttctcaacaacattgtg-aggattttgagaaactcgacaatttg |
377 |
Q |
| |
|
||||||||| | ||||||||| ||||||| ||| |||||||||||||| |||||| |
|
|
| T |
39863463 |
ttgttgttaaccttctcaacaccattgtgaaggtgtttgagaaactcgaaaatttg |
39863408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 38980370 - 38980708
Alignment:
| Q |
15 |
caaagactttgaagaaattgatgctatgatagatgaggacattgttgctgcaattgacagagttttattagaagggattacatttcccttaaaatctcgg |
114 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| | ||||| | || |||||||||||| |||||||||||| || || ||||||||| | |
|
|
| T |
38980370 |
caaagacttgaaagaagttgatgctatgatagatgaggatgtcattgcttctatcaacagagttttatcagaagggattaccatttccgtaaaatctcag |
38980469 |
T |
|
| Q |
115 |
cattttgtacaaggacaagaagcatcgaaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaaagaggacttggttg |
214 |
Q |
| |
|
|||| ||| |||| |||||||| || ||||| ||||||||||| |||| ||||| ||||||||||| ||||||| | |||| || |||||||||| |
|
|
| T |
38980470 |
cattctgtccaagaacaagaagtctcaaaactgtatcccaacctccctgagaaacttcttcaggaattgtgggatattgtctttgaatgagacttggttg |
38980569 |
T |
|
| Q |
215 |
aaaa---atttaaaggtcttctttctctagaagttaacttcaacacagtcaaagaaaaaattgacgatagtgctgacgcgttttcctctgaccaattaga |
311 |
Q |
| |
|
|||| |||| |||||| ||||| ||| ||| |||||||| ||||||| |||||| |||||| || ||||||| |||||||||| ||||| |||| |
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|
| T |
38980570 |
aaaaattatttgaaggtc-tcttt-acta-aagacaacttcaatgcagtcaaggaaaaatttgacgctaatgctgacttgttttcctctaaccaactaga |
38980666 |
T |
|
| Q |
312 |
acaagtcggtgttgttgttagctttctcaacaacattgtgag |
353 |
Q |
| |
|
||||||| |||| ||||| | || |||||||||||||||| |
|
|
| T |
38980667 |
acaagtcagtgtctttgttgaccttgtcaacaacattgtgag |
38980708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 39897150 - 39897025
Alignment:
| Q |
11 |
tcagcaaagactttgaagaaattgatgctatgatagatgaggacattgttgctgcaattgacagagttttattagaagggattacatttcccttaaaatc |
110 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||||| || ||||| | || |
|
|
| T |
39897150 |
tcagcatagacttggaagaaattgatgctatgatagatgaggatgtcattgctgcaatcgacagagttttatcagaagggattactctttccttagagtc |
39897051 |
T |
|
| Q |
111 |
tcggcattttgtacaaggacaagaag |
136 |
Q |
| |
|
|| ||| |||||||||| |||||| |
|
|
| T |
39897050 |
ccgtaattctgtacaaggagaagaag |
39897025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 380
Target Start/End: Complemental strand, 39846703 - 39846488
Alignment:
| Q |
166 |
caactttttcaggaattgagggatatcgcctttaaagaggacttggttgaaaaatttaaaggtcttctttctctagaagttaacttcaacacagtcaaag |
265 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | |||||||||| |||||||||| |||| ||| ||||| |||||||| |||||| | |
|
|
| T |
39846703 |
caacttcttcaggaattgagggatatcgcctttaaaaaagacttggttgtaaaatttaaactaggtcttgctcgtgaagtaaacttcaatgtagtcaagg |
39846604 |
T |
|
| Q |
266 |
aaaaaattgacgatagtgctgacgcgttttcctctgaccaattagaacaagtcggtgttgttgttagctttctcaacaacattgtgaggat-tttgagaa |
364 |
Q |
| |
|
| ||||| || | || ||||||| ||| | ||| | ||||| ||||||| ||||||||||| |||||||||||| |||| | |||| |||||||| |
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|
| T |
39846603 |
ataaaatcgaagctaatgctgacatgttatattctcgcgaattaaaacaagttcatgttgttgttaactttctcaacaaaattgagtggatgtttgagaa |
39846504 |
T |
|
| Q |
365 |
actcgacaatttggaa |
380 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
39846503 |
actcgaaaaattggaa |
39846488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 142 - 356
Target Start/End: Original strand, 53495279 - 53495491
Alignment:
| Q |
142 |
aaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaaagaggacttggttgaaaaat-ttaaaggtcttctttctcta |
240 |
Q |
| |
|
||||| |||||||||||| | |||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||| ||| ||| | |
|
|
| T |
53495279 |
aaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaaaga---cttggttgaaaaaaattaaagaaggtctcactcca |
53495375 |
T |
|
| Q |
241 |
gaagttaacttcaacacagtcaaagaaaaaattgacgatagtgctgacgcgttttcctctgaccaattagaacaagtcggtgttgttgttagctttctca |
340 |
Q |
| |
|
||||||||||||| || |||| | ||||||||||| || |||||| ||||| |||||| | |||||||||||| | ||||||||||||| | |||||| |
|
|
| T |
53495376 |
aaagttaacttcaatgcaatcaaggtaaaaattgacgctaatgctgatgcgttctcctctcagcaattagaacaaattggtgttgttgttaaccttctca |
53495475 |
T |
|
| Q |
341 |
acaacattgtgaggat |
356 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
53495476 |
acaacattgtgaggat |
53495491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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