View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_low_13 (Length: 491)
Name: NF3410_low_13
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_13 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 31010348 - 31009858
Alignment:
| Q |
1 |
ataattgctccatcaaaaaccaagcatttccaacccaattcatccctaaaaaccaagaagtgaaacaaagcaggaaacacaaagctaagaataacacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31010348 |
ataattgctccatcaaaaaccaaacatttccaacccaattcatctctaaaaaccaagaagtgaaacaaagcaggaaacacaaagctaagaataacacaaa |
31010249 |
T |
|
| Q |
101 |
cactgctcccaactagtgacaaaaaatcagcaaagttaggtaccaaaaatgcgactaaacttaccaccaaaaccaacaaccacctaagccacaaacaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31010248 |
cactgctcccaactagtgacaaaaaatcagcaaagttaggtaccaaaaatgcgactaaacttaccaccaaaaccaacaaccacctaagccacaaacaata |
31010149 |
T |
|
| Q |
201 |
cttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaaagacctaattgaaccaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31010148 |
cttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaaagacctaattgtaccaaa |
31010049 |
T |
|
| Q |
301 |
gcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagcaaaacctccatacaacagaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31010048 |
gcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagcaaaacctccatacaatagaa |
31009949 |
T |
|
| Q |
401 |
aaattagaaacattcccaaacccaaaactccaccaaatttatctttatcttttgcttctgattccaaaggcaaaaccattcctattccttc |
491 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31009948 |
aaattaggaacattcccaaacccaaaactccaccaaatttatctttatcttttgcttctgattccaaaggcaaaaccattcctattccttc |
31009858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 9782333 - 9782707
Alignment:
| Q |
1 |
ataattgctccatcaaaaaccaagcatttccaacccaattcatccctaaaaaccaagaagtgaaacaaagcaggaaacacaaagctaagaataacacaaa |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| || ||| ||||||||| | |||||||||||||| |||||||| | ||||| |||||||| |
|
|
| T |
9782333 |
ataattgccccatctgaaaccaagcatttccaacccaactcttccttaaaaaccatacaatgaaacaaagcaggcaacacaaaaccaagaacaacacaaa |
9782432 |
T |
|
| Q |
101 |
cactgctcccaactagtgacaaaaaatcagcaaagttaggtaccaaaaatgcgactaaacttaccaccaaaaccaacaaccacctaagccacaaacaata |
200 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||| || || ||||||| ||| || ||||| ||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
9782433 |
cactacttccaacaagtgacaaaaaatcagcaaaatttggcaccaaaactgccaccaaactcaccaccaaaaccaacaaccacctcacccataaacaata |
9782532 |
T |
|
| Q |
201 |
cttagatttacaaaatcttctctcaacaatttcataaacaggattcatcatcaaaggaaaggtgaaaaagagattgacacaaagacctaattgaaccaaa |
300 |
Q |
| |
|
| |||| | |||||| |||||||||| || ||||||||||||||||||||||||||||| || | ||| | ||| | ||| || ||||||||||||| | |
|
|
| T |
9782533 |
cctagaatcacaaaaccttctctcaaaaacctcataaacaggattcatcatcaaaggaaatgtaataaacaaattaatacatagccctaattgaaccata |
9782632 |
T |
|
| Q |
301 |
gcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagcaaagtaacctaaa |
375 |
Q |
| |
|
|| |||| ||||| |||| ||| |||||||||| | | |||| |||||||||||||||| ||||||||| |
|
|
| T |
9782633 |
acacctatcacaccttgacctaaattattagtaataatatccttagtttcttcaccaaaagcaaaataacctaaa |
9782707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 16353200 - 16353116
Alignment:
| Q |
61 |
tgaaacaaagcaggaaacacaaagctaagaataacacaaacactgctcccaactagtgacaaaaaatcagcaaagttaggtacca |
145 |
Q |
| |
|
|||| |||||||| ||||||||| | ||| | || ||| |||||||| ||||| ||||| | |||||||||||| ||||| |||| |
|
|
| T |
16353200 |
tgaatcaaagcagaaaacacaaatccaagcacaatacacacactgcttccaacaagtgaaagaaaatcagcaaaattaggcacca |
16353116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University