View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_low_14 (Length: 470)
Name: NF3410_low_14
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 88 - 454
Target Start/End: Complemental strand, 12322823 - 12322458
Alignment:
| Q |
88 |
ccattcgtccgtgacacacacaaaataaaaacacccatcccgtgaaatattctcatcaacacgtgtctcttcatctcctctcatgaaaaataaagtaatg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12322823 |
ccattcgtccgtgacacacacaaaataaaaacacc-atcccgtgaaatattctcatcaacacgtgtctcttcatctcctctcatgaaaaataaagtaatg |
12322725 |
T |
|
| Q |
188 |
tgaccacaaactgaaaatgaagactttctttcttagttcttgaaatttctgcagaatcttcttatagctgcatgtgaaaatattgcctaagaattgaaac |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12322724 |
tgaccacaaactgaaaatgaagactttctttcttagttcttgaaatttctgcagaatcttcttatagctgcatgtgaaaatattgcctaagaattgaaac |
12322625 |
T |
|
| Q |
288 |
tatgaccatactatacgtaacaatgaaccactaataacatgtcacgtgttatagcttataatcacaaacacttttgtcacctcagaacacnnnnnnngtg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12322624 |
tatgaccatactatacgtaacaatgaaccactaataacatgtcacgtgttatagcttataatcacaaacacttttgtcacctcagaacacaaaaaaagtg |
12322525 |
T |
|
| Q |
388 |
cactcacgaatctctctagtcacttaattggttttgttgtttatgaagtttctttctctgttctttc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12322524 |
cactcacgaatctctctagtcacttaattggttttgttgtttatgaagtttctttctctgttctttc |
12322458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University