View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_2 (Length: 973)
Name: NF3410_low_2
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_2 |
 | |
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| [»] scaffold0257 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 906; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 906; E-Value: 0
Query Start/End: Original strand, 1 - 962
Target Start/End: Original strand, 3567769 - 3568730
Alignment:
| Q |
1 |
tttctctacaaccgagccttcttcgtctctctcaatggacaaaggattttaaccacaattctcataaatagacacatgcttcactttggattaggctggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3567769 |
tttctctacaaccgagccttcttcgtctctctcaatggacaaaggattttaaccacaattctcataaatagacacatgcttcactttggattaggctggt |
3567868 |
T |
|
| Q |
101 |
tgtgttgcctcaggaacatcggtgggaacgcacgttgatggaaatagcaagtgtcgtgggtactccgattgttatagatgccccgactcggaatagggca |
200 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3567869 |
tgtgttgcctcaggaatattggtgggaacgcacgttgatggaaatagcaagtgtcgtgggtactccgattgttatagatgccccgactcggaatagggcc |
3567968 |
T |
|
| Q |
201 |
ttcaaacattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgtggggcggcagggtttttctttcaaagtagata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3567969 |
ttcaaacattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgtggagcggcagggtttttctttcaaagtagata |
3568068 |
T |
|
| Q |
301 |
tgcagtatgagcgcatgcctcttttttgtcatcattgttatgttattggtcataacatttcaaattgtaagtggttgcatcccagagccttctcgcgaca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3568069 |
tgcagtatgagcgcatgcctcttttttgtcatcattgttatgtcattggtcataacatttcaaattgtaagtggttgtatcccagagccttctcgcgaca |
3568168 |
T |
|
| Q |
401 |
aagacaaaggaaagaagaaggtggaggatgaataaatttttgttcccattaagcatgtggaagtgacaacacctttgtccactgcgactgttgatgttaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3568169 |
aagacaaaggaaagaagaaggtggaggatgaataaatttttgttcccattaagcatgtggaagtgacaacacctttgtccactgcgactgttgatgttaa |
3568268 |
T |
|
| Q |
501 |
tcaagaaaaatgttcttcgtctgatgttccttccaaggatatttccgccaactcctttagcttcaccttgaagaatgtgtcggatcatattcctcaaggt |
600 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3568269 |
tcaagaaaaatcttcttcgtctgatgttccttccaaggatatttccgccaactcctttagcttcaccttgaagaatgtgtcggatcatattcctcaaggt |
3568368 |
T |
|
| Q |
601 |
agacttcctcgtcctgatatccatgttttggagttggccactgatgttgagcaagatgacatgcaagttcttcaaatggagcaaacgcagccagaaaaca |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3568369 |
agacttcctcgtcctgatatccatgttttggagttggccactgatgttgagcaagatgacatgcaagttcttcaaatggagcaaacgcagccagaaaaca |
3568468 |
T |
|
| Q |
701 |
cgaacttgcatgttcctttttcggttgcagctgcgtcggtttcaagttttgtagagcacgttgaagtgcatgatgatttggcttctactgatttggtttc |
800 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3568469 |
cgaactcgcatgttcctttttcggttgcagctgcgtccgtttcaagttttgtagagcacgttgaagtgcatgatgatttggcttctactgatttggtttc |
3568568 |
T |
|
| Q |
801 |
tgctagagagcaatctcctttgctggtccaacatttctcccaagaggaagtgtgcatagaccacacgattgaaggaattcgcccttctggctcctcaccc |
900 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
3568569 |
tgctagagaggaatctcctttgctggtccaacatttctcccaagaggaagtgtgcatagaccacatgattgaaggaatacgcccttctggctcctcaccc |
3568668 |
T |
|
| Q |
901 |
acattggcgcatcagcagaatgatcttgctaactcggccaacatagcacatttagatgatga |
962 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
3568669 |
acattggcgcatcagcagaatgatcttgctaactcggccaacatagcacatttggattatga |
3568730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 32239357 - 32239235
Alignment:
| Q |
150 |
agtgtcgtgggtactccgattgttatagatgccccgactcggaatagggc--attcaaacattatgcacgaattttggtggatattgacctatctaagcg |
247 |
Q |
| |
|
||||| || ||||||||||| | | ||||||||||||| || |||||||| ||||| ||| ||||| ||||||||||||| |||||| ||||||| | |
|
|
| T |
32239357 |
agtgttgttggtactccgatagatttagatgccccgacacgaaatagggctaattcagacactatgcgagaattttggtggacattgacttatctaaaag |
32239258 |
T |
|
| Q |
248 |
tgtgtatgatgaaatccttgtgg |
270 |
Q |
| |
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| ||||||||||| ||||||| |
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| T |
32239257 |
agcctatgatgaaattcttgtgg |
32239235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 24371742 - 24372011
Alignment:
| Q |
1 |
tttctctacaaccgagccttcttcgtctctctcaatggacaaaggattttaaccacaattctcataaatagacacatgcttcactttggattaggctggt |
100 |
Q |
| |
|
|||||||||||| | | || ||||||| ||||||||||| || |||||||| ||||| ||||| ||| | |||||| |||| | ||||| | ||| || |
|
|
| T |
24371742 |
tttctctacaactgggtctccttcgtccctctcaatggatgaaagattttaatcacaactctcaaaaacaaacacatacttcgatctggatcaagctagt |
24371841 |
T |
|
| Q |
101 |
tgtgttgcctcaggaacatcggtgggaacgcacgttgatggaaatagcaagtgtcgtgggtactccgattgttatagatgccccgactcggaatagggca |
200 |
Q |
| |
|
| ||||||||||||| | || | ||| | ||||| |||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||| |
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|
| T |
24371842 |
ttagttgcctcaggaatactggcgagaaataatgttgaaggaaatagcaagtgcggtgggtactctgattgccctagatgccccgactcgtaatagggcc |
24371941 |
T |
|
| Q |
201 |
ttcaaacattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgtgg |
270 |
Q |
| |
|
|||| |||||||||| |||||||||||| |||||| | |||||| | | |||||||||| ||||||| |
|
|
| T |
24371942 |
ttcagacattatgcataaattttggtggacattgacttgtctaagagggccgatgatgaaattcttgtgg |
24372011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 45270593 - 45270331
Alignment:
| Q |
6 |
ctacaaccgagccttcttcgtctctctcaatggacaaaggattttaaccacaattctcataaatagacacatgcttcactttggattaggctggttgtgt |
105 |
Q |
| |
|
||||||||| | || |||||||| ||||||||||| ||||||||||| || || ||||| | |||||||||| ||||| ||||| || || |||| || |
|
|
| T |
45270593 |
ctacaaccgggtctccttcgtctttctcaatggacgaaggattttaatcataactctcaggcacagacacatgcatcactatggatcagacttgttgagt |
45270494 |
T |
|
| Q |
106 |
tgcctcaggaacatcggtgggaacgcacgttgatggaaatagcaagtgtcgtgggtactccgattgttatagatgccccgactcggaatagggcattcaa |
205 |
Q |
| |
|
||||||||||| || |||| || | || |||| |||||||||||||||||||||||||| ||| ||| |||| ||||| | ||||| |||||| |
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|
| T |
45270493 |
tgcctcaggaatattggtgtgagagaactttgaaagaaatagcaagtgtcgtgggtactccaatttctattgatgggccgacaggaaatagagcattcgg |
45270394 |
T |
|
| Q |
206 |
acattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgt |
268 |
Q |
| |
|
||| |||||||| ||| | |||| || ||| |||| ||||| || ||||| ||||| ||||| |
|
|
| T |
45270393 |
acactatgcacgcattcttatggacatcgacttatcaaagcgggtctatgacgaaattcttgt |
45270331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 10431524 - 10431639
Alignment:
| Q |
1 |
tttctctacaaccgagccttcttcgtctctctcaatggacaaaggattttaaccacaattctcataaatagacacatgcttcactttggattaggctggt |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||| || ||| | || ||||||||| | ||||| ||||| || |
|
|
| T |
10431524 |
tttctctacaaccaggtcttcttcgtctctctcaatggacgaaagactttaaccacaattcgcaaaaacaaactcatgcttcaatatggatcaggctagt |
10431623 |
T |
|
| Q |
101 |
tgtgttgcctcaggaa |
116 |
Q |
| |
|
|| ||||||| ||||| |
|
|
| T |
10431624 |
tgcgttgccttaggaa |
10431639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 14463 - 14679
Alignment:
| Q |
21 |
cttcgtctctctcaatggacaaaggattttaaccacaattctcataaatagacacatgcttcactttggattaggctggttgtgttgcctcaggaacatc |
120 |
Q |
| |
|
|||||||||||| ||||||| || || |||| | |||| ||||||||| |||| ||||||||| | ||||||||||| |||| | ||||||| ||| || |
|
|
| T |
14463 |
cttcgtctctcttaatggacgaaagactttagctacaactctcataaacagactcatgcttcaatatggattaggcttgttgagctgcctcaagaatatt |
14562 |
T |
|
| Q |
121 |
ggtgggaacgcacgttgatggaaatagcaagtgtcgtgggtactccgattgttatagatg-ccccgactcggaatagggcattcaaacattatgcacgaa |
219 |
Q |
| |
|
|| | || | ||||||| ||||||| || | ||||||||| || ||| | | || | ||||||| || |||||||| |||| |||||||||||||| |
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|
| T |
14563 |
ggcgtgagagaacgttgaaagaaataggtagcgccgtgggtaccccaatttctctcgacgcccccgacacgtaatagggccttcagacattatgcacgaa |
14662 |
T |
|
| Q |
220 |
ttttggtggatattgac |
236 |
Q |
| |
|
|| ||||||| |||||| |
|
|
| T |
14663 |
ttctggtggacattgac |
14679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 26183300 - 26183387
Alignment:
| Q |
25 |
gtctctctcaatggacaaaggattttaaccacaattctcataaatagacacatgcttcactttggattaggctggttgtgttgcctca |
112 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| |||| ||| | || ||||||||| | ||||||||||| |||| ||||||||| |
|
|
| T |
26183300 |
gtctctctcaatggacgaaagactttaaccacaacactcagaaacaaactcatgcttcaatatggattaggctagttgagttgcctca |
26183387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 100746 - 100783
Alignment:
| Q |
21 |
cttcgtctctctcaatggacaaaggattttaaccacaa |
58 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
100746 |
cttcgcctctctcaatggacgaaggattttaaccacaa |
100783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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