View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_21 (Length: 400)
Name: NF3410_low_21
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 4619484 - 4619169
Alignment:
| Q |
18 |
atatggatcatccaatttgatcggacggtcatgcagtcactcactgtgtaaatgcatgtagtaagtgatgacagagaatcttaaaaaataactgaggagg |
117 |
Q |
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| T |
4619484 |
atatggatcatccaatttgatcggacggtcatgcagtcactcactgtataaatgcatgtagtaagtgatgacagagaatcttaaaaaataactgaggagg |
4619385 |
T |
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| Q |
118 |
gtaaataagtaacgtacctgagagtgagagtgagatttcttatgtttcgagtgggagtgaaactttgagacacagcttgtaaagaatctcttcatgcatt |
217 |
Q |
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| T |
4619384 |
gtaaataagtaacgtacctgagagtgagagtgagatttcttatgtttcgagtgggagtgaaactttgagacacagcttgtgaagaatctcttcatgcatt |
4619285 |
T |
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| Q |
218 |
aactatatatactaatacaccccccgctcaaatttgcgagtaacgcctaaggaaaattgggtgaccaaccagaaaatttccttccaattcaaatatcata |
317 |
Q |
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| T |
4619284 |
aactatatatactaatacaccccccactcaaatttgcgagtaacgcctaaggaaaattgggtgaccaaccagaaaatttccttccaattcaaatatcata |
4619185 |
T |
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| Q |
318 |
atccaaactatgggat |
333 |
Q |
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| T |
4619184 |
atccaaactttgggat |
4619169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 4619138 - 4619076
Alignment:
| Q |
322 |
aaactatgggatcacgaatatttattgaatattttttggggggttgtgtctctgtgctttttg |
384 |
Q |
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| T |
4619138 |
aaactatgggatcacgaatatttattgaatattttttggggggttgtgtctctgtgctttttg |
4619076 |
T |
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