View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3410_low_25 (Length: 334)

Name: NF3410_low_25
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3410_low_25
NF3410_low_25
[»] chr8 (2 HSPs)
chr8 (1-308)||(6312655-6312960)
chr8 (269-308)||(6312596-6312635)
[»] chr2 (5 HSPs)
chr2 (158-242)||(37773083-37773164)
chr2 (268-308)||(25619130-25619170)
chr2 (180-243)||(37772576-37772639)
chr2 (177-223)||(37202688-37202734)
chr2 (268-308)||(37202553-37202593)
[»] chr1 (1 HSPs)
chr1 (177-254)||(15256883-15256960)
[»] chr4 (3 HSPs)
chr4 (268-308)||(31199067-31199107)
chr4 (181-254)||(34747100-34747173)
chr4 (172-244)||(47594156-47594228)
[»] chr5 (2 HSPs)
chr5 (267-308)||(10505000-10505041)
chr5 (280-308)||(7433912-7433940)
[»] chr3 (2 HSPs)
chr3 (269-308)||(40542394-40542433)
chr3 (180-225)||(43820531-43820576)
[»] chr7 (1 HSPs)
chr7 (158-225)||(4262492-4262555)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 6312960 - 6312655
Alignment:
Q  1 aaaaaagaggcaccttcccttagaaacaaaaggtttaacnnnnnnnnnntctaacgtataaaaatgcacgaggtaatgtgtttttggtgtcttgagaatg 100  Q
    |||||||||||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6312960 aaaaaagaggcaccttcccttagaaacaaa-ggtttaacaaaaaaaaaatctaacgtataaaaatgcacgaggtaatgtgtttttggtgtcttgagaatg 6312862  T
Q  101 aaccctatggtaattttgcattaattatattgcttctaggtaaactaacaaggaaggttctttttaggccccctctctcatatctctttagacctcttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6312861 aaccctatggtaattttgcattaattatattgcttctaggtaaactaacaaggaaggttctttttaggccccccctctcatatctctttagacctcttaa 6312762  T
Q  201 aattatgaaattgtccttaataacatgtcaagtagataactatcagatgttcatatnnnnnnnntatcattttgtacagccggtagataactaccggatg 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  6312761 aattatgaaattgtccttaataacacgtcaagtagataactatcagatgttcatat-aaaaaaatatcattttgtacagccggtagataactaccggatg 6312663  T
Q  301 ttcatttt 308  Q
    ||||||||    
T  6312662 ttcatttt 6312655  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 6312635 - 6312596
Alignment:
Q  269 attttgtacagccggtagataactaccggatgttcatttt 308  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  6312635 attttgtacatccggtagataactatcggatgttcatttt 6312596  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 37773164 - 37773083
Alignment:
Q  158 ttctttttaggccccctctctcatatctctttagacctcttaaaattatgaaattgtccttaataacatgtcaagtagataacta 242  Q
    ||||||||||||||||   |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||   ||||||||||    
T  37773164 ttctttttaggccccc---ctcatatctctttataccccttaaaatcatgaaattgcccttaataacatgtcctctagataacta 37773083  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 25619170 - 25619130
Alignment:
Q  268 cattttgtacagccggtagataactaccggatgttcatttt 308  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  25619170 cattttgtacatccggtaaataactaccggatgttcatttt 25619130  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 37772639 - 37772576
Alignment:
Q  180 atatctctttagacctcttaaaattatgaaattgtccttaataacatgtcaagtagataactat 243  Q
    ||||||||||| ||| |||||||| | ||||||| |||||||||||||||   |||||||||||    
T  37772639 atatctctttataccccttaaaatcacgaaattgcccttaataacatgtcctctagataactat 37772576  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 37202734 - 37202688
Alignment:
Q  177 ctcatatctctttagacctcttaaaattatgaaattgtccttaataa 223  Q
    ||||||||||||||| || ||||||||||||||| ||| ||||||||    
T  37202734 ctcatatctctttagcccccttaaaattatgaaactgttcttaataa 37202688  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 37202593 - 37202553
Alignment:
Q  268 cattttgtacagccggtagataactaccggatgttcatttt 308  Q
    |||||||||||  ||||||||||||| ||||||||||||||    
T  37202593 cattttgtacattcggtagataactagcggatgttcatttt 37202553  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 15256960 - 15256883
Alignment:
Q  177 ctcatatctctttagacctcttaaaattatgaaattgtccttaataacatgtcaagtagataactatcagatgttcat 254  Q
    |||| ||| |||||| || | |||||||||||||||| ||||||||||  || | |||||||||||||||||||||||    
T  15256960 ctcacatccctttaggccccctaaaattatgaaattgcccttaataacgcgttatgtagataactatcagatgttcat 15256883  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 31199107 - 31199067
Alignment:
Q  268 cattttgtacagccggtagataactaccggatgttcatttt 308  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  31199107 cattttgtacatccggtagataactaccggatgttcatttt 31199067  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 34747100 - 34747173
Alignment:
Q  181 tatctctttagacctcttaaaattatgaaattgtccttaataacatgtcaagtagataactatcagatgttcat 254  Q
    ||||||||||| |||| ||||||||  |||||||||||||||||| ||   ||||||||||| | |||||||||    
T  34747100 tatctctttaggcctcctaaaattacaaaattgtccttaataacacgttttgtagataactaccggatgttcat 34747173  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 47594228 - 47594156
Alignment:
Q  172 cctctctcatatctctttagacctcttaaaattatgaaattgtccttaataacatgtcaagtagataactatc 244  Q
    |||| ||||| ||||||||| || | ||||||||| |||||| | ||| |||||||||  |||||||||||||    
T  47594228 cctccctcatgtctctttaggccccctaaaattataaaattgcctttagtaacatgtcttgtagataactatc 47594156  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 10505000 - 10505041
Alignment:
Q  267 tcattttgtacagccggtagataactaccggatgttcatttt 308  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  10505000 tcattttgtacatccggtagataactaccgaatgttcatttt 10505041  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 308
Target Start/End: Original strand, 7433912 - 7433940
Alignment:
Q  280 ccggtagataactaccggatgttcatttt 308  Q
    |||||||||||||||||||||||||||||    
T  7433912 ccggtagataactaccggatgttcatttt 7433940  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 40542394 - 40542433
Alignment:
Q  269 attttgtacagccggtagataactaccggatgttcatttt 308  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  40542394 attttgtatatccggtagataactaccggatgttcatttt 40542433  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 43820531 - 43820576
Alignment:
Q  180 atatctctttagacctcttaaaattatgaaattgtccttaataaca 225  Q
    |||||||||||| |||  |||||||||||||||||| |||||||||    
T  43820531 atatctctttaggccttctaaaattatgaaattgtctttaataaca 43820576  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 4262555 - 4262492
Alignment:
Q  158 ttctttttaggccccctctctcatatctctttagacctcttaaaattatgaaattgtccttaataaca 225  Q
    ||||||||||||||||   ||||||| |||||||||||| ||||||||  ||| ||||||||||||||    
T  4262555 ttctttttaggccccc---ctcatatttctttagacctc-taaaattacaaaactgtccttaataaca 4262492  T

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