View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_26 (Length: 334)
Name: NF3410_low_26
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 38659250 - 38659542
Alignment:
| Q |
19 |
ggattgaagtgtgttggatccaaagagggaagtggaaataatgaacagagaagaaaaagaaaccgtggtggtgttagggaaaaattggggaccgagagag |
118 |
Q |
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| T |
38659250 |
ggattgaagtgtattggatccaaagagggaagtggaaataatgaacagagaagaaaaagaaaccgtggtggtgttagggaaaaattggggaccgagagag |
38659349 |
T |
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| Q |
119 |
tgagttttgttggggaatgatttacctctttgttcttgttggatgatgaattaatttcttcctttttgttcatgtggatctgtatttgaattatgtttat |
218 |
Q |
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| T |
38659350 |
tgagttttgttggggaatgatttacctctttgttcttgttggatgatgaattaatttcttcctttttgttcatgtggatctgtatttgaattatgtttat |
38659449 |
T |
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| Q |
219 |
tattgggttttgtttcatgttggatgatgaactaag----nnnnnnnnnnnnngctttgaaatccttcactgttgttggttggatgatgaata |
307 |
Q |
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| T |
38659450 |
tattgggttttgtttcatgttggatgatgaactaagtttttttttttttttttgctttgaaatccttcactgttgttggttggatgatgaata |
38659542 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 42444851 - 42444913
Alignment:
| Q |
64 |
cagagaagaaaaagaaaccgtggtggtgttagggaaaaattggggaccgagagagtgagtttt |
126 |
Q |
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| T |
42444851 |
cagagaagaaaaagaaatagtggttttgttacggaaaaattggggaccgagagagtgattttt |
42444913 |
T |
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