View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_3 (Length: 795)
Name: NF3410_low_3
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 214 - 728
Target Start/End: Complemental strand, 4619700 - 4619169
Alignment:
| Q |
214 |
aacaagaatttcaacaccttnnnnnnngaaacaagaatttcaacaaacatgttaactgcaatgcaaccattaaccattgg-tggtatacacttctcagaa |
312 |
Q |
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| T |
4619700 |
aacaagaatttcaacaccttaaaaaaagaaacaagaatttcaacaaacatgttaactgcaatgcaaccattaaccattgggtggtatacacttctcagaa |
4619601 |
T |
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| Q |
313 |
aaaactaaaatctgcagtgaagctttaaaaacaggttacaacggccacatt----------------gacggtcaaattttgatttcctttaaaaatgga |
396 |
Q |
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| T |
4619600 |
aaaactaaaatctgcagtgaagctttaaaaacaggttacaacggccacattaaggtcacggacattggacggtcaaattttgatttcctttaaaaatgga |
4619501 |
T |
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| Q |
397 |
aattacgaagtttgaaatatggatcatccaatttgatcggacggtcatgcagtcactcactgtgtaaatgcatgtagtaagtgatgacagagaatcttaa |
496 |
Q |
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| T |
4619500 |
aattacgaagtttgaaatatggatcatccaatttgatcggacggtcatgcagtcactcactgtataaatgcatgtagtaagtgatgacagagaatcttaa |
4619401 |
T |
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| Q |
497 |
aaaataactgaggagggtaaataagtaacgtacctgagagtgagagtgagatttcttatgtttcgagtgggagtgaaactttgagacacagcttgtaaag |
596 |
Q |
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| T |
4619400 |
aaaataactgaggagggtaaataagtaacgtacctgagagtgagagtgagatttcttatgtttcgagtgggagtgaaactttgagacacagcttgtgaag |
4619301 |
T |
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| Q |
597 |
aatctcttcatgcattaactatatatactaatacaccccccgctcaaatttgcgagtaacgcctaaggaaaattgggtgaccaaccagaaaatttccttc |
696 |
Q |
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| T |
4619300 |
aatctcttcatgcattaactatatatactaatacaccccccactcaaatttgcgagtaacgcctaaggaaaattgggtgaccaaccagaaaatttccttc |
4619201 |
T |
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| Q |
697 |
caattcaaatatcataatccaaactatgggat |
728 |
Q |
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| T |
4619200 |
caattcaaatatcataatccaaactttgggat |
4619169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 4619934 - 4619685
Alignment:
| Q |
15 |
cagagatgtttcctgccattatctgtcaaacaaaacaatatca------taaaacaatgatgctaaataccaagaagaaacaatttgcctcaggtgacgc |
108 |
Q |
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| T |
4619934 |
cagagatgtttcctgccattatctgtcaaacaaaacaatatcaatatcataaaacaatgatgctaaataccaagaagaaacaatttgcctcagatgacac |
4619835 |
T |
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| Q |
109 |
aacttgtgatgtgttctgcgtgtgtgtttaacatctatttagcatcaacacttcatattgaaggcgtgttcggtatccaacaccggcacaagtattgttc |
208 |
Q |
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| T |
4619834 |
aacttgtgatgtgttctacgtgtgtgtttaacatctatttagcatcaacacttcatattgaaggcttgttcggtatccaacaccggcacaagtattgttc |
4619735 |
T |
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| Q |
209 |
agtctaacaagaatttcaacaccttnnnnnnngaaacaagaatttcaaca |
258 |
Q |
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| T |
4619734 |
agtctaacaagaatttcaacaccttaaaaaaagaaacaagaatttcaaca |
4619685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 717 - 779
Target Start/End: Complemental strand, 4619138 - 4619076
Alignment:
| Q |
717 |
aaactatgggatcacgaatatttattgaatattttttggggggttgtgtctctgtgctttttg |
779 |
Q |
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| T |
4619138 |
aaactatgggatcacgaatatttattgaatattttttggggggttgtgtctctgtgctttttg |
4619076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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