View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_31 (Length: 297)
Name: NF3410_low_31
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 2483328 - 2483572
Alignment:
| Q |
18 |
gtttttgctttgttaagcatttatttgttaactttcactttccttgttttccatttggaataaaagtttcagagtataaataaccaatcaatgaagaaaa |
117 |
Q |
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| T |
2483328 |
gtttttgctttgttaagcatttatttgttaactttcactttccttgttttccatttggaataaaagttcaagatgataaataaccaatcaatgaagaaaa |
2483427 |
T |
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| Q |
118 |
atatattttgtgcaaatcactgggaaaaattaacatgaaatttctgttagatagtagtatattatattgtaagtggtttagtcttttgtgcttttagtat |
217 |
Q |
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| T |
2483428 |
atatattttgtgcaaatcactgggaaaaattaacatgaaatttctgttaga---tagtatattatattg------------------gtgcttttagtat |
2483506 |
T |
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| Q |
218 |
ataaacattttcattgcattgtattattataagacttcttatttggtattattggatcttttgtgt |
283 |
Q |
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| T |
2483507 |
ataaacattttcattgcattgtattattataagacttcttatttggtattattggatcttttgtgt |
2483572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 10295159 - 10295248
Alignment:
| Q |
49 |
ctttcactttccttgttttccatttggaataaaagtttcagagtataaataaccaatcaatgaagaaaaatatattttgtgcaaatcact |
138 |
Q |
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| T |
10295159 |
ctttcatttttcttattttccatttagaatacaatttgcagtttctaaataaccaatcactaagggaaaatattttttgtgcaaatcact |
10295248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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