View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_36 (Length: 271)
Name: NF3410_low_36
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 61 - 258
Target Start/End: Original strand, 25588776 - 25588977
Alignment:
| Q |
61 |
ttgaattaaatacatccaataatttcaaa-tattgtattagttttcaaacattccgagtaaaaatccacctaactatatatcgaatttcacttcnnnnnn |
159 |
Q |
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| T |
25588776 |
ttgaattaaatatatccaataatttcaaaatattgtattagttttcaaacattccgagtaaaaatctacctaaccatatatcgaatttcactt-tttttt |
25588874 |
T |
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| Q |
160 |
nngggtcaaggaaaagttcacttttttagtcaacaaaatacgataaaaagattggcaatgtaatgat----aaaaagaaatggtatttcacggaagcttc |
255 |
Q |
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| T |
25588875 |
ttgggtcaaggaaaagttcacttttttagtcaacacaatacgataaaaagattggcaatgtaatgatgatgaaaaagaaatggtatttcacggaagcttc |
25588974 |
T |
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| Q |
256 |
aca |
258 |
Q |
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||| |
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| T |
25588975 |
aca |
25588977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 25566521 - 25566596
Alignment:
| Q |
61 |
ttgaattaaatacatccaataatttca-aatattgtattagttttcaaacattccgagtaaaaatccacctaacta |
135 |
Q |
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| T |
25566521 |
ttgaattaaaaaaatccaataatttaagaatattgtattcgttttcaaacactcttagtaaaaatctacctaacta |
25566596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 25566875 - 25566911
Alignment:
| Q |
163 |
ggtcaaggaaaagttcacttttttagtcaacaaaata |
199 |
Q |
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| T |
25566875 |
ggtcaaggaaaagttcacttttttagtcaacacaata |
25566911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 25567014 - 25567065
Alignment:
| Q |
210 |
attggcaatgtaatgataaaaagaaa---tggtatttcacggaagcttcaca |
258 |
Q |
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| T |
25567014 |
attggcaatgtaatgataaaaaaaaaaaatcgtatttcacggaagcttcaca |
25567065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 25588717 - 25588758
Alignment:
| Q |
6 |
acttattcatcttaactgatggatttttacccacaatattat |
47 |
Q |
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| T |
25588717 |
acttattcatcttaattgatgaatttttacccactatattat |
25588758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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