View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_41 (Length: 250)
Name: NF3410_low_41
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_41 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 45287394 - 45287634
Alignment:
| Q |
12 |
gaatatgaaattttggacttaaatcgtatacttatagccccccatgttt-gggaatataaaattttaaactatcctcaaatacttatagcccc-atgtat |
109 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||||| |
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| T |
45287394 |
gaatatgaaattttggacttaaattgtatacttatagccccccatgtttagggaatataaaattttaaactatcctcagatgcttatagcccccatgtat |
45287493 |
T |
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| Q |
110 |
aagacatattgatttgtttgaggttagcattgaaaaatagagtgtttgtatattattaatgagagtggaagattaaaaatacactatccagaggaagatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
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| T |
45287494 |
aagacatattgatttgtttgaggttagcattgaaaaatagagtgtttgtatattattaatgagagtggaagactgaaaatacactattcagaggaagatt |
45287593 |
T |
|
| Q |
210 |
ttgtagcctcccgtgtagtgttttacattgtttttatttat |
250 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45287594 |
ttgtagcctcctgtgtagtgttttacattgtttttatttat |
45287634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 45287713 - 45287895
Alignment:
| Q |
61 |
gggaatataaaattttaaactatcctcaaatacttatagccccatgtataagacatattgatttgtttgaggttagcattgaaaaata--gagtgtttgt |
158 |
Q |
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|||||||||||||||| ||||| | |||||||||| || ||| ||||||| | |||||||||||||||||||||| |||| |||||| |||||||||| |
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| T |
45287713 |
gggaatataaaattttgaactaccatcaaatactt-taaacccttgtataaaaaatattgatttgtttgaggttagtattgcaaaatacggagtgtttgt |
45287811 |
T |
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| Q |
159 |
atattattaatgagagtggaagattaaaaatacactatccagaggaagattttgta-gcctcccgtgtagtgttttacattgttttt |
244 |
Q |
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| T |
45287812 |
atattat---tgagagtggaagactgaaaatacattgtccataggaagattttgcacgtctcccgtgtagtgtttttcatttttttt |
45287895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 31609406 - 31609160
Alignment:
| Q |
9 |
gaagaatatgaaattttggacttaaatcgtatacttatagccccccatgttt-gggaatataaaattttaaactatcctcaaatacttatagcccc-atg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31609406 |
gaagaatatgaaattttggacttaaatcgtatacttatagccccc-atgtttagggaatataaaattttaaactatcctcaaatacttatagcccccatg |
31609308 |
T |
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| Q |
107 |
tataagaca----tattgatttgtttgaggttagcattgaaaaatagagtgtttgtatattattaatgagagtggaagattaaaaatacactatccagag |
202 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
31609307 |
tataagacaaacatattgatttgtttgagattagcattgaaaaatagagtgattgtatattattaatgagagtggaagactgaaaatacactatccagag |
31609208 |
T |
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| Q |
203 |
gaagattttgtagcctcccgtgtagtgttttacattgtttttatttat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31609207 |
gaagattttgtagcctcccgtgtagtgttttacattgtttttatttat |
31609160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 31609080 - 31608900
Alignment:
| Q |
62 |
ggaatataaaattttaaactatcctcaaatacttatagccccatgtataagacatattgatttgtttgaggttagcattgaaaaata--gagtgtttgta |
159 |
Q |
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||||||||||||||||||||| | |||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||| |||||| ||||||||||| |
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| T |
31609080 |
ggaatataaaattttaaactaccatcaaatacttatagacccttgtataagaaatattgatttgtttgaggttagtattgcaaaatacggagtgtttgta |
31608981 |
T |
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| Q |
160 |
tattattaatgagagtggaagattaaaaatacactatccagaggaagattttgta-gcctcccgtgtagtgttttacattgttttt |
244 |
Q |
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||||||| |||||||||| | |||||||| | |||| ||||| |||||| | | | ||||||||||||||| |||| ||||| |
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| T |
31608980 |
tattatt---gagagtggaac--tgaaaatacattgtccataggaatattttgcaagtcacccgtgtagtgtttttcatttttttt |
31608900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 1059021 - 1059162
Alignment:
| Q |
9 |
gaagaatatgaaattttggacttaaatcgtatacttat---agccccccatgtttggg--aatataaaattttaaactatcctcaaatacttatagcccc |
103 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||| ||| ||||| ||| | |||||||||||| |||||| | ||||||| |||||||||| |
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| T |
1059021 |
gaagaatatgaaatttaggacttaaatcaaatacttattatagcatcccatatttagagaaatataaaatttcaaactaccatcaaatatttatagcccc |
1059120 |
T |
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| Q |
104 |
-atgtataagacatattgatttgtttgaggttagcattgaaa |
144 |
Q |
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| T |
1059121 |
catgtataggaaatattgatttgtttgaggttagcattgaaa |
1059162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 12630486 - 12630688
Alignment:
| Q |
9 |
gaagaatatgaaattttggacttaaatcgtatacttatagccccccatgttt-gggaatataaaattttaaactatcctcaaatacttatag---cccca |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
12630486 |
gaagaatatgaaattttggacttaaatcgtatacttatagccccccatgtttagggaatataaaattttaaattatcctcaaatacttatatagccccca |
12630585 |
T |
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| Q |
105 |
tgtataagac----atattgatttgtttgaggttagcattgaaaaatagagtgtttgtatattattaatgagagtggaagattaaaaatacactatccag |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
12630586 |
tgtataagacagacatattgatttgtttgaggttagcattgaaatatagagtgtttgtatattattaatgagagtggaagactgaaaatacactatccag |
12630685 |
T |
|
| Q |
201 |
agg |
203 |
Q |
| |
|
||| |
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|
| T |
12630686 |
agg |
12630688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 34029692 - 34029551
Alignment:
| Q |
9 |
gaagaatatgaaattttggacttaaatcgtatacttat---agccccccatgtttggg--aatataaaattttaaactatcctcaaatacttatagcccc |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||| ||||| ||| | |||||||||||| |||||| | ||||||| |||||||||| |
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| T |
34029692 |
gaagaatatgaaatttaggacttaaatcaaatacttattatagcatcccatatttagagaaatataaaatttcaaactaccatcaaatatttatagcccc |
34029593 |
T |
|
| Q |
104 |
-atgtataagacatattgatttgtttgaggttagcattgaaa |
144 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||| |
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| T |
34029592 |
catgtataggaaatattgatttgtttgaggttagcattgaaa |
34029551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 14938802 - 14938661
Alignment:
| Q |
9 |
gaagaatatgaaattttggacttaaatcgtatacttat---agccccccatgtttggg--aatataaaattttaaactatcctcaaatacttatagcccc |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |||| ||||| ||| | |||||||||||| |||||| | |||||||||||||||||| |
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| T |
14938802 |
gaagaatatgaaatttaggacttaaatcaaatacttattatagcctcccatatttagagaaatataaaatttcaaactaccatcaaatacttatagcccc |
14938703 |
T |
|
| Q |
104 |
-atgtataagacatattgatttgtttgaggttagcattgaaa |
144 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||| |
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| T |
14938702 |
catgtataggaaatattgatttgtttgaggttagcattgaaa |
14938661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 34988012 - 34987871
Alignment:
| Q |
9 |
gaagaatatgaaattttggacttaaatcgtatacttat---agccccccatgtttggg--aatataaaattttaaactatcctcaaatacttatagcc-c |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |||| ||||| ||| | |||||||||||| |||||| | ||||||| |||||||| | |
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| T |
34988012 |
gaagaatatgaaatttaggacttaaatcaaatacttattatagcctcccatatttagagaaatataaaatttcaaactaccatcaaataattatagccac |
34987913 |
T |
|
| Q |
103 |
catgtataagacatattgatttgtttgaggttagcattgaaa |
144 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
34987912 |
catgtataggaaatattgatttgtttgaggttagcattgaaa |
34987871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 22792578 - 22792693
Alignment:
| Q |
9 |
gaagaatatgaaattttggacttaaatcgtatacttatagccccccatgtttgggaatataaaattttaaactatcctcaaatacttatagcccc-atgt |
107 |
Q |
| |
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||||||||| |||||||||||||||||| |||||| ||||||| || || |||||||||||||||| ||||| | |||||||||||||||||| |||| |
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| T |
22792578 |
gaagaatataaaattttggacttaaatcaaatacttttagccccatat-ttagggaatataaaattttgaactaccatcaaatacttatagcccctatgt |
22792676 |
T |
|
| Q |
108 |
ataagacatattgattt |
124 |
Q |
| |
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| |||| |||||||||| |
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| T |
22792677 |
agaagaaatattgattt |
22792693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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