View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3410_low_43 (Length: 250)

Name: NF3410_low_43
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3410_low_43
NF3410_low_43
[»] chr3 (3 HSPs)
chr3 (152-249)||(1829694-1829791)
chr3 (20-148)||(1829240-1829373)
chr3 (67-127)||(51039754-51039814)
[»] chr7 (3 HSPs)
chr7 (67-128)||(33922787-33922848)
chr7 (66-111)||(35567129-35567174)
chr7 (67-119)||(34681699-34681751)
[»] chr1 (2 HSPs)
chr1 (66-130)||(44442246-44442310)
chr1 (67-111)||(26857238-26857282)
[»] scaffold0219 (1 HSPs)
scaffold0219 (66-128)||(21306-21368)
[»] chr4 (2 HSPs)
chr4 (72-130)||(19597202-19597260)
chr4 (66-131)||(51105917-51105982)
[»] chr8 (2 HSPs)
chr8 (17-130)||(12639926-12640043)
chr8 (66-106)||(42022639-42022679)
[»] chr6 (1 HSPs)
chr6 (66-106)||(12307845-12307885)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 1829694 - 1829791
Alignment:
Q  152 aagattcttagtcgaattttatttatcttttgacaggatcttttttacttgaaaacccgaaggttaaccactattcaaaactcaccttaatccaaaca 249  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1829694 aagattcttagtcgaattttatttatcttttgaccggatcctttttacttgaaaacccgaaggttaaccactattcaaaactcaccttaatccgaaca 1829791  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 1829240 - 1829373
Alignment:
Q  20 tctttaagggtttaaaatagtaactttt-gcgaaaacttgtgtattct----attgaaaattaaactatttgacatttttaaaaaataatttactaactt 114  Q
    ||||||||| |||||||| ||||||||| ||||||| ||||||||||     ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1829240 tctttaaggatttaaaatggtaactttttgcgaaaatttgtgtattcagtacattgaaaattaaactatttgatatttttaaaaaataatttactaactt 1829339  T
Q  115 agaatatttaaaaagtatttgagagaccttcgtt 148  Q
    |||||||||||||||| ||| |||| || |||||    
T  1829340 agaatatttaaaaagtgtttcagaggccctcgtt 1829373  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 51039814 - 51039754
Alignment:
Q  67 attgaaaattaaactatttgacatttttaaaaaataatttactaacttagaatatttaaaa 127  Q
    |||||||||| ||||||||||| |||||| | ||||||||  ||| ||| |||||||||||    
T  51039814 attgaaaattgaactatttgacttttttatagaataattttttaatttaaaatatttaaaa 51039754  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 33922787 - 33922848
Alignment:
Q  67 attgaaaattaaactatttgacatttttaaaaaataatttactaacttagaatatttaaaaa 128  Q
    |||||||||| ||||||||||| |||||||| |||||||| |||| |||||||  |||||||    
T  33922787 attgaaaattgaactatttgacttttttaaagaataattttctaatttagaatgcttaaaaa 33922848  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 35567174 - 35567129
Alignment:
Q  66 tattgaaaattaaactatttgacatttttaaaaaataatttactaa 111  Q
    ||||| |||||||| |||||||| ||||||||||||||||| ||||    
T  35567174 tattggaaattaaaatatttgacttttttaaaaaataattttctaa 35567129  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 34681751 - 34681699
Alignment:
Q  67 attgaaaattaaactatttgacatttttaaaaaataatttactaacttagaat 119  Q
    |||| ||||| ||||||||||| ||| ||||||||||||| |||| |||||||    
T  34681751 attggaaattgaactatttgacttttgtaaaaaataatttcctaatttagaat 34681699  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 44442310 - 44442246
Alignment:
Q  66 tattgaaaattaaactatttgacatttttaaaaaataatttactaacttagaatatttaaaaagt 130  Q
    ||||||||||| || |||||||| |||||||| |||||||| |||| ||| |||| |||||||||    
T  44442310 tattgaaaattgaaatatttgacttttttaaagaataatttcctaatttaaaatacttaaaaagt 44442246  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 26857238 - 26857282
Alignment:
Q  67 attgaaaattaaactatttgacatttttaaaaaataatttactaa 111  Q
    ||||||||||||||||||| || |||||||| |||||||| ||||    
T  26857238 attgaaaattaaactatttaacttttttaaagaataattttctaa 26857282  T

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Target: scaffold0219 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 21306 - 21368
Alignment:
Q  66 tattgaaaattaaactatttgacatttttaaaaaataatttactaacttagaatatttaaaaa 128  Q
    |||| ||||||||| ||||| ||||||||||||||||||||  ||| |||||||  |||||||    
T  21306 tattaaaaattaaaatatttaacatttttaaaaaataatttcttaatttagaattcttaaaaa 21368  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 19597202 - 19597260
Alignment:
Q  72 aaattaaactatttgacatttttaaaaaataatttactaacttagaatatttaaaaagt 130  Q
    ||||| |||||||||||||||||||| |||||||| ||||  ||||||  |||||||||    
T  19597202 aaattgaactatttgacatttttaaagaataatttcctaatgtagaatgcttaaaaagt 19597260  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 51105982 - 51105917
Alignment:
Q  66 tattgaaaattaaactatttgacatttttaaaaaataatttactaacttagaatatttaaaaagta 131  Q
    |||||||||||||| |||||||| |||||||| |||||||   ||  |||||||||||||| ||||    
T  51105982 tattgaaaattaaaatatttgacttttttaaataataattgtttattttagaatatttaaagagta 51105917  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 12640043 - 12639926
Alignment:
Q  17 caatctttaagggtttaaaatagtaacttttgcgaaaacttgtgtattc----tattgaaaattaaactatttgacatttttaaaaaataatttactaac 112  Q
    ||||||||||||||||||| |||||| ||||  ||||| ||||||| ||    | ||||||||  || ||||| || ||||||| || |||||| ||||     
T  12640043 caatctttaagggtttaaagtagtaatttttatgaaaagttgtgtaatcaatgttttgaaaatcgaattatttaacttttttaataattaatttcctaat 12639944  T
Q  113 ttagaatatttaaaaagt 130  Q
    |||||||  |||||||||    
T  12639943 ttagaatgcttaaaaagt 12639926  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 42022639 - 42022679
Alignment:
Q  66 tattgaaaattaaactatttgacatttttaaaaaataattt 106  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
T  42022639 tattggaaattgaactatttgacttttttaaaaaataattt 42022679  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 12307885 - 12307845
Alignment:
Q  66 tattgaaaattaaactatttgacatttttaaaaaataattt 106  Q
    |||||||||||||| |||||||| |||||| ||||||||||    
T  12307885 tattgaaaattaaaatatttgacttttttataaaataattt 12307845  T

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