View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_45 (Length: 241)
Name: NF3410_low_45
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 21377976 - 21378196
Alignment:
| Q |
12 |
tcatcaacaatgaagtatctttaatgtactacaacattatgtgttaaatcgttcataatgctattaggaaaagacgataaaagtcaacccaataattttt |
111 |
Q |
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| T |
21377976 |
tcatcaacaatgaagtatctttaatgtactacaacattatgttttaagtcgttcataatgctattaggaaaagacgataaaagtcaacccaataattttt |
21378075 |
T |
|
| Q |
112 |
aatactaagttagacctacaacaaag-nnnnnnngttactgatctaaaacaagttttaatatgtggagccttttatattcgcatatatgtagttttggtt |
210 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21378076 |
aatactaagttagacctacaacaaagttttttttgttactgatctaaaacaagttttaatatgtggagccttttatattcgcatatatgtagttttggtt |
21378175 |
T |
|
| Q |
211 |
tagaaaatctgaaaaataata |
231 |
Q |
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||||||||||||||||||||| |
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| T |
21378176 |
tagaaaatctgaaaaataata |
21378196 |
T |
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