View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_48 (Length: 239)
Name: NF3410_low_48
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_48 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 7192584 - 7192804
Alignment:
| Q |
19 |
cgttttgttgagcatagaatttccacaatagctttctttgttgcttgatttgtcaatgatattatcttcctctacatattttatttacacaaattaaaac |
118 |
Q |
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| T |
7192584 |
cgttttgttgagcatagaatttccacaatagctttctttgttgcttgatttgtcaatgatattatcttcctctacatattttatttacacaaattaaaac |
7192683 |
T |
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| Q |
119 |
atgcatcttttcattaattgtatgcgtttattgtcaacaaaaacaacatatataagtacaattataaacatgaattagaatcattagtgtccaactcgaa |
218 |
Q |
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| T |
7192684 |
atgcatcttttcattaattgtatgcgtttattgtcaacaaaaacaacatatataagtacaattataaacatgaattagaatcattagtgtccaactcgaa |
7192783 |
T |
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| Q |
219 |
cgtcaacaattggatccaatt |
239 |
Q |
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||||||||||||||||||||| |
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| T |
7192784 |
cgtcaacaattggatccaatt |
7192804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 7179415 - 7179516
Alignment:
| Q |
19 |
cgttttgttgagcatagaatttccacaatagctttctttgttgcttgatttgtcaatgatattatcttcctctacatattttatttacacaaattaaaac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |||||||||||||||||| |
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| T |
7179415 |
cgttttgttgagcatagaatttccacaatagctttctttgttgcttgatttgtcaataatattatcttcctctgcaaatttcatttacacaaattaaaac |
7179514 |
T |
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| Q |
119 |
at |
120 |
Q |
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|| |
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| T |
7179515 |
at |
7179516 |
T |
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