View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3410_low_49 (Length: 239)

Name: NF3410_low_49
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3410_low_49
NF3410_low_49
[»] chr5 (12 HSPs)
chr5 (81-215)||(41688787-41688917)
chr5 (1-61)||(43234869-43234930)
chr5 (1-61)||(20923719-20923780)
chr5 (1-51)||(41688732-41688782)
chr5 (1-61)||(18843716-18843777)
chr5 (1-61)||(22645786-22645847)
chr5 (1-62)||(23172499-23172561)
chr5 (1-61)||(18051597-18051658)
chr5 (1-60)||(19042456-19042516)
chr5 (1-60)||(20320926-20320986)
chr5 (1-61)||(19578943-19579004)
chr5 (1-61)||(21059222-21059283)
[»] chr7 (13 HSPs)
chr7 (1-62)||(5058529-5058591)
chr7 (1-61)||(11326387-11326448)
chr7 (1-61)||(27221419-27221480)
chr7 (6-61)||(44944921-44944977)
chr7 (1-67)||(22687731-22687798)
chr7 (1-61)||(14055252-14055313)
chr7 (1-61)||(14365280-14365341)
chr7 (1-61)||(26281376-26281437)
chr7 (12-61)||(5715291-5715341)
chr7 (3-61)||(7730412-7730470)
chr7 (1-61)||(4247357-4247418)
chr7 (1-61)||(24725544-24725605)
chr7 (29-61)||(30294176-30294208)
[»] chr6 (11 HSPs)
chr6 (1-61)||(6943527-6943588)
chr6 (1-61)||(30912479-30912540)
chr6 (3-61)||(15528179-15528238)
chr6 (1-61)||(17250058-17250119)
chr6 (4-61)||(7223520-7223578)
chr6 (1-61)||(7918448-7918509)
chr6 (1-61)||(26053363-26053424)
chr6 (1-61)||(26073416-26073477)
chr6 (1-61)||(17543807-17543868)
chr6 (1-61)||(23897812-23897873)
chr6 (29-61)||(21354749-21354781)
[»] chr4 (6 HSPs)
chr4 (1-61)||(8011283-8011344)
chr4 (1-61)||(13023568-13023630)
chr4 (1-61)||(5362030-5362091)
chr4 (1-60)||(5375666-5375726)
chr4 (1-61)||(10142900-10142961)
chr4 (28-61)||(37240263-37240296)
[»] chr1 (15 HSPs)
chr1 (1-61)||(9955102-9955163)
chr1 (1-61)||(18304878-18304939)
chr1 (1-61)||(25146835-25146896)
chr1 (1-64)||(42180132-42180196)
chr1 (1-61)||(23528657-23528718)
chr1 (1-61)||(9352130-9352191)
chr1 (1-61)||(12800648-12800709)
chr1 (1-61)||(30619076-30619137)
chr1 (1-61)||(34478837-34478898)
chr1 (1-60)||(19010013-19010073)
chr1 (1-61)||(9327282-9327343)
chr1 (1-61)||(13276333-13276394)
chr1 (1-61)||(21846335-21846396)
chr1 (6-61)||(9128912-9128968)
chr1 (1-60)||(12513283-12513343)
[»] chr3 (7 HSPs)
chr3 (1-62)||(3449358-3449420)
chr3 (1-61)||(29067285-29067346)
chr3 (1-61)||(8156198-8156259)
chr3 (3-55)||(21963436-21963489)
chr3 (3-55)||(21985872-21985925)
chr3 (1-61)||(28745771-28745832)
chr3 (1-61)||(20756040-20756101)
[»] chr2 (7 HSPs)
chr2 (1-61)||(36429849-36429910)
chr2 (1-61)||(15516626-15516687)
chr2 (1-61)||(31238044-31238105)
chr2 (7-62)||(35566027-35566083)
chr2 (1-61)||(1404784-1404845)
chr2 (1-61)||(23863388-23863449)
chr2 (1-60)||(25539293-25539353)
[»] chr8 (6 HSPs)
chr8 (1-60)||(15294672-15294732)
chr8 (1-60)||(15475041-15475101)
chr8 (1-60)||(19704522-19704583)
chr8 (1-61)||(5922050-5922111)
chr8 (1-61)||(17646994-17647055)
chr8 (1-61)||(477114-477175)
[»] scaffold0417 (1 HSPs)
scaffold0417 (1-61)||(7522-7583)
[»] scaffold0186 (1 HSPs)
scaffold0186 (1-61)||(8444-8505)
[»] scaffold0510 (1 HSPs)
scaffold0510 (1-61)||(168-229)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-61)||(48855-48916)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 41688787 - 41688917
Alignment:
Q  81 ttatgatccttcatgattaagttataatttatattgtttctataaaaggggttgtagatgtagcacgaatttatacataaaattgagttgaatatagtat 180  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  41688787 ttatgatccttcatgattaagttataattaatattgttcctataaaaggggttgtagatgtagcacgaatttatacataaaattgagttgaatatag--- 41688883  T
Q  181 atatagtctgttgcgttaaaactcttgttgtctgt 215  Q
     ||||||||||||||||||||||||||||||||||    
T  41688884 -tatagtctgttgcgttaaaactcttgttgtctgt 41688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 43234930 - 43234869
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  43234930 tgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagttgggattttgacaacaa 43234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20923780 - 20923719
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||    
T  20923780 tgaaggtgaagaaagtcgcaaaattctggattttaggatttaagtcgggattttgacaacaa 20923719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41688732 - 41688782
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaattttaggatttaagttgggatt 51  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  41688732 tgaaggtgaagaaaattgcaaaatccgaattttaggatttaagttgggatt 41688782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18843777 - 18843716
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | ||||| |||||||||||| || |||||||||||||    
T  18843777 tgaaggtgaagaaagtcgcaaaatcctgaattataggatttaagtcggaattttaacaacaa 18843716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22645786 - 22645847
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | | |||||||||||||||| |||||||| |||||||    
T  22645786 tgaaggtgaagaaagtcgcaaaatactggattttaggatttaagtcgggattttgacaacaa 22645847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23172499 - 23172561
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaa-ttttaggatttaagttgggattttaacaacaaa 62  Q
    ||||| |||||||||||||||||| | || ||||||||||||||| |||||||| ||||||||    
T  23172499 tgaagatgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaaa 23172561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18051597 - 18051658
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaacaa 61  Q
    ||||| |||||||||||||||||| | | |||||||||||||||| |||||||| |||||||    
T  18051597 tgaagttgaagaaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaacaa 18051658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19042456 - 19042516
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaacaaca 60  Q
    ||||||||||||||||| |||||| |  |||||||| ||||||||||||||||| ||||||    
T  19042456 tgaaggtgaagaaagtcacaaaatcttaaattttagaatttaagttgggattttgacaaca 19042516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20320986 - 20320926
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaacaaca 60  Q
    |||||||||||||||| ||||||| |  |||||||||||||| ||||||||||| ||||||    
T  20320986 tgaaggtgaagaaagttgcaaaatcttaaattttaggatttaggttgggattttgacaaca 20320926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19579004 - 19578943
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||| ||||||||| | | |||||| |||||||||||| ||||| |||||||    
T  19579004 tgaaggtgaagaaaatcgcaaaatcctggattttatgatttaagttggaattttgacaacaa 19578943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21059222 - 21059283
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaacaa 61  Q
    |||| ||||||||||||||||||| | | |||||||||||||| | |||||||| |||||||    
T  21059222 tgaaagtgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaa 21059283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5058591 - 5058529
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaaa 62  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  5058591 tgaaggtgaagaaaatcgcaaaattctgaattttaggatttaagtcgggattttgacaacaaa 5058529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11326448 - 11326387
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaa-ttttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||    
T  11326448 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaa 11326387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27221480 - 27221419
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  27221480 tgaagatgaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttaacaacaa 27221419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 44944921 - 44944977
Alignment:
Q  6 gtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||    
T  44944921 gtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 44944977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22687731 - 22687798
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaaactcaa 67  Q
    ||||| |||||||||||||||| | | |||||||||||||||||| |||||||| ||||||| |||||    
T  22687731 tgaagttgaagaaagtcgcaaattcctgaattttaggatttaagtcgggattttgacaacaatctcaa 22687798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14055313 - 14055252
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | | |||||||||| ||||| |||||||| |||||||    
T  14055313 tgaaggtgaagaaagtcgcaaaatcttggattttaggatataagtggggattttcacaacaa 14055252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14365341 - 14365280
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | | |||||||||| ||||| |||||||| |||||||    
T  14365341 tgaaggtgaagaaagtcgcaaaatcttggattttaggatataagtggggattttcacaacaa 14365280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26281376 - 26281437
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | |||||||| ||||||||| || ||||| |||||||    
T  26281376 tgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaa 26281437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 5715341 - 5715291
Alignment:
Q  12 aaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||| | |||||||||||||||||| |||||||| |||||||    
T  5715341 aaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 5715291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 7730412 - 7730470
Alignment:
Q  3 aaggtgaagaaagtcgcaaaattcgaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||   | ||||||||||||||||  ||||||| |||||||    
T  7730412 aaggtgaagaaagtcgcaaaacctggattttaggatttaagtcaggattttgacaacaa 7730470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4247418 - 4247357
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||| |||||||||||  |||||| | |||||||||||||||| |||||||||| |||||||    
T  4247418 tgaaagtgaagaaagttacaaaatcctgaattttaggatttaaattgggattttgacaacaa 4247357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24725544 - 24725605
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||| ||||| | | ||||||||||||||||  ||||||| |||||||    
T  24725544 tgaaggtgaagaaagtcgtaaaatcttggattttaggatttaagtctggattttgacaacaa 24725605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 30294208 - 30294176
Alignment:
Q  29 attttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||||||||||| |||||||    
T  30294208 attttaggatttaagttgggattttgacaacaa 30294176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6943527 - 6943588
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||    
T  6943527 tgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 6943588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30912479 - 30912540
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaa-ttttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||    
T  30912479 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaa 30912540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 15528179 - 15528238
Alignment:
Q  3 aaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||    
T  15528179 aaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 15528238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17250119 - 17250058
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||    
T  17250119 tgaaggtgaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaacaacaa 17250058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 7223578 - 7223520
Alignment:
Q  4 aggtgaagaaagtcgcaaaattcgaa-ttttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||||||| | || ||||||||||||||| |||||||| |||||||    
T  7223578 aggtgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 7223520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7918448 - 7918509
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||| ||||||||||||| | ||||||||| |||||||| |||||||| |||||||    
T  7918448 tgaaggtgaaaaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaa 7918509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26053363 - 26053424
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | | |||||| ||||||||| |||||||| |||||||    
T  26053363 tgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaa 26053424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26073416 - 26073477
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | | |||||| ||||||||| |||||||| |||||||    
T  26073416 tgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaa 26073477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17543807 - 17543868
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||| ||||| ||||||||||||| | |||||||||||||||||| | |||||| |||||||    
T  17543807 tgaaagtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgagattttgacaacaa 17543868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23897873 - 23897812
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||| ||||||||||||||||||| | | |||||||||||||||| ||||| ||| ||||||    
T  23897873 tgaacgtgaagaaagtcgcaaaatcctgcattttaggatttaagtcgggatcttatcaacaa 23897812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 21354781 - 21354749
Alignment:
Q  29 attttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||||||||||| |||||||    
T  21354781 attttaggatttaagttgggattttgacaacaa 21354749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8011283 - 8011344
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||||    
T  8011283 tgaaggtgaagaaagtcgcaaaatcctgaattttaggatttgagttgggattttgacaacaa 8011344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13023630 - 13023568
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaa--ttttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | ||  |||||||||||||||||||||||| |||||||    
T  13023630 tgaaggtgaagaaagtcgcaaaatcctaaatttttaggatttaagttgggattttgacaacaa 13023568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5362030 - 5362091
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||| |||||||||||||||||| | |||||||||||||||||| |||||||| |||||||    
T  5362030 tgaagatgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 5362091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5375726 - 5375666
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaacaaca 60  Q
    |||||||||||||||||||||||| |  |||||||| ||||| ||||||||||| ||||||    
T  5375726 tgaaggtgaagaaagtcgcaaaatcttaaattttagaatttaggttgggattttgacaaca 5375666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10142961 - 10142900
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||| ||||||||||||||| |  |||||||| |||||||| |||||||| |||||||    
T  10142961 tgaaggtggagaaagtcgcaaaatattaaattttagaatttaagtcgggattttcacaacaa 10142900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 37240296 - 37240263
Alignment:
Q  28 aattttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||| ||||||||||||||||    
T  37240296 aattttaggatttaagtagggattttaacaacaa 37240263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9955102 - 9955163
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaa-ttttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||    
T  9955102 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaa 9955163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18304878 - 18304939
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||||||    
T  18304878 tgaaggtgaagaaagtcgcaaaatactggattttaggatttaagttgggattttgacaacaa 18304939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25146835 - 25146896
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||    
T  25146835 tgaaggtgaagaaagtcgcaaaattctgaattttaggatttaagtcaggattttgacaacaa 25146896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42180132 - 42180196
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaaact 64  Q
    |||||| ||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||    
T  42180132 tgaaggggaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttgacaacaaact 42180196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23528718 - 23528657
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||| |||||||||||||||||| | |||||||| |||||||||||||||||| |||||||    
T  23528718 tgaagatgaagaaagtcgcaaaatcctgaattttaagatttaagttgggattttgacaacaa 23528657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9352130 - 9352191
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||  | | |||||||||||||||| |||||||| |||||||    
T  9352130 tgaaggtgaagaaagtcgcaaaaccctggattttaggatttaagtcgggattttgacaacaa 9352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12800648 - 12800709
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaa-ttttaggatttaagttgggattttaacaacaa 61  Q
    |||| ||||||||||||| ||||| | || |||||||||||||||||||||||| |||||||    
T  12800648 tgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaagttgggattttcacaacaa 12800709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30619137 - 30619076
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||| ||||||||| | | |||||||||||||||| |||||||| |||||||    
T  30619137 tgaaggtgaagaaaatcgcaaaatcctggattttaggatttaagtcgggattttgacaacaa 30619076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34478837 - 34478898
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaa-ttttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||| |||||| | || ||||| ||||||||| ||||||||||||||||    
T  34478837 tgaaggtgaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaacaacaa 34478898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19010013 - 19010073
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaaca 60  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||  ||||||| ||||||    
T  19010013 tgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtccggattttgacaaca 19010073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9327282 - 9327343
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcgaa-ttttaggatttaagttgggattttaacaacaa 61  Q
    |||||||| ||||||||||||||  | || |||||||||||||||  |||||||||||||||    
T  9327282 tgaaggtgtagaaagtcgcaaaaccctaaattttaggatttaagtcaggattttaacaacaa 9327343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 13276333 - 13276394
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaacaa 61  Q
    ||||| |||||||||||||||||| | | |||||||||||||| | |||||||| |||||||    
T  13276333 tgaagatgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaa 13276394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21846335 - 21846396
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||| ||||||||||||| | | |||||||||||||| | |||||||| |||||||    
T  21846335 tgaaggtgaaaaaagtcgcaaaatcctggattttaggatttaactcgggattttgacaacaa 21846396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 9128912 - 9128968
Alignment:
Q  6 gtgaagaaagtcgcaaaattcgaatttt-aggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||| || | |||||| ||||||||||| | ||||||||||||||    
T  9128912 gtgaagaaagtcgcaagatcctaatttttaggatttaagtcgtgattttaacaacaa 9128968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12513343 - 12513283
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaaca 60  Q
    ||||| |||||||||||||||||| | | ||| |||||||||||| |||||||| ||||||    
T  12513343 tgaagctgaagaaagtcgcaaaatcctagattgtaggatttaagtcgggattttgacaaca 12513283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3449358 - 3449420
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaaa 62  Q
    ||||||| |||||||||||||||| | |||||||||||||||||| |||||||| ||||||||    
T  3449358 tgaaggtaaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaaa 3449420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29067346 - 29067285
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | ||||||||| |||||||| |||||||| |||||||    
T  29067346 tgaaggtgaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaa 29067285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8156198 - 8156259
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||| ||| ||| ||||||| ||||||||| ||||||||||||||||| |||||||    
T  8156198 tgaaggtgaaaaaaatcgtaaaattctgaattttagaatttaagttgggattttgacaacaa 8156259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21963489 - 21963436
Alignment:
Q  3 aaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaa 55  Q
    |||||||||||||||| ||||| | |||||||||||||||||| ||||||||||    
T  21963489 aaggtgaagaaagtcgtaaaatcttgaattttaggatttaagtcgggattttaa 21963436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21985925 - 21985872
Alignment:
Q  3 aaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaa 55  Q
    |||||||||||||||| ||||| | |||||||||||||||||| ||||||||||    
T  21985925 aaggtgaagaaagtcgtaaaatcttgaattttaggatttaagtcgggattttaa 21985872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28745832 - 28745771
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| |  ||||||||||||||| | |||||||| |||||||    
T  28745832 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaaatcgggattttgacaacaa 28745771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20756101 - 20756040
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||| ||||||||| | ||||||||  |||||||| |||||||| |||||||    
T  20756101 tgaaggtgaagaaaatcgcaaaatcctgaattttataatttaagtcgggattttgacaacaa 20756040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36429910 - 36429849
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | | ||| ||||||||||||||||||||| |||||||    
T  36429910 tgaaggtgaagaaagtcgcaaaatcctagattataggatttaagttgggattttgacaacaa 36429849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15516626 - 15516687
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||| ||||||||||||| | |||| ||| ||||||||||| ||||||||||||||    
T  15516626 tgaaggtgaataaagtcgcaaaatgctgaatattaagatttaagttgcgattttaacaacaa 15516687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31238044 - 31238105
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||| ||||||| | | |||||||||||||||| |||||||| |||||||    
T  31238044 tgaaggtgaagaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaacaa 31238105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 35566027 - 35566083
Alignment:
Q  7 tgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaaa 62  Q
    |||||||||||||||||| | |||||||  |||||||||||||||||| ||||||||    
T  35566027 tgaagaaagtcgcaaaatcctgaattttgtgatttaagttgggattttgacaacaaa 35566083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1404845 - 1404784
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||| |||||| |  |||||||| |||||||| |||||||| |||||||    
T  1404845 tgaaggtgaagaaagtcacaaaatcctaaattttagaatttaagtcgggattttgacaacaa 1404784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23863388 - 23863449
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||| |||||||||||||||||||||   ||||||| |||||||| |||||||| |||||||    
T  23863388 tgaaagtgaagaaagtcgcaaaattctcgattttagaatttaagtcgggattttgacaacaa 23863449  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25539293 - 25539353
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaat-tcgaattttaggatttaagttgggattttaacaaca 60  Q
    |||||||||||||| | ||||| | | |||||||||||||||| | |||||||||||||||    
T  25539293 tgaaggtgaagaaaattgcaaattcttgaattttaggatttaaatcgggattttaacaaca 25539353  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15294732 - 15294672
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaaca 60  Q
    |||||||||| ||||||||||||| | |||||||||||||||||| |||||||| ||||||    
T  15294732 tgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15294672  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15475101 - 15475041
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaaca 60  Q
    |||||||||| ||||||||||||| | |||||||||||||||||| |||||||| ||||||    
T  15475101 tgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15475041  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19704522 - 19704583
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc--gaattttaggatttaagttgggattttaacaaca 60  Q
    |||||||||||||||||||||||  |  |||||||| |||||||||||||||||| ||||||    
T  19704522 tgaaggtgaagaaagtcgcaaaaaccttgaattttaagatttaagttgggattttgacaaca 19704583  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5922111 - 5922050
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||| |||||| | | |||||||||||||||| |||||||| |||||||    
T  5922111 tgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcgggattttgacaacaa 5922050  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17647055 - 17646994
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||||||||||||||||| | |||||||| ||||||||| || ||||| |||||||    
T  17647055 tgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaa 17646994  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 477114 - 477175
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||| |||||| | | ||||||||||||||||  ||||||| |||||||    
T  477114 tgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcaggattttgacaacaa 477175  T

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Target: scaffold0417 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7522 - 7583
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||||| |||||||||||||||| | ||||||||| |||||||| |||||| |||||||||    
T  7522 tgaaggtaaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattctaacaacaa 7583  T

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Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 8505 - 8444
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    ||||||||||||||||||||||||   | |||||||||||||||| |||||||| |||||||    
T  8505 tgaaggtgaagaaagtcgcaaaatcgtggattttaggatttaagtagggattttgacaacaa 8444  T

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Target: scaffold0510 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 168 - 229
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattc-gaattttaggatttaagttgggattttaacaacaa 61  Q
    |||| ||||||||||||||||||| | | |||||||||||||||| ||||| ||| ||||||    
T  168 tgaacgtgaagaaagtcgcaaaatcctgcattttaggatttaagtcgggatcttatcaacaa 229  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 48855 - 48916
Alignment:
Q  1 tgaaggtgaagaaagtcgcaaaattcga-attttaggatttaagttgggattttaacaacaa 61  Q
    |||||||||| ||||| ||||||||| | |||||||||||||||| || ||||| |||||||    
T  48855 tgaaggtgaataaagttgcaaaattctagattttaggatttaagtcggaattttcacaacaa 48916  T

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