View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_5 (Length: 712)
Name: NF3410_low_5
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 9 - 691
Target Start/End: Original strand, 36958088 - 36958778
Alignment:
| Q |
9 |
agcagagatgaggatcgtgagtgaaagaacgaatggcagagtggcatggtttagtattatgtcgttaggtatctgcattggagtttcagctttacaattg |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36958088 |
agcagagatgaggatcgtgagtgaaagaacgaatggcagagtggcatggtttagtattatgtcgttaggtatctgcattggagtttcagctttacaattg |
36958187 |
T |
|
| Q |
109 |
tggcatttgaagagatttttccagaagaagaagcttatatagttatgcaagtgttaatttaattttactagtgaaacaacaatcataaactaaagnnnnn |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36958188 |
tggcatttgaagagatttttccagaagaagaagcttatatagttatgcaagtgttaatttaattttactagtgaaacaacaatcataaactaaagttttt |
36958287 |
T |
|
| Q |
209 |
nnnnnnngagtcctacttacaagcaccagccagannnnnnnn-gttaccatacagagtttccaacttttcttatctactgatgtttattataatgcattt |
307 |
Q |
| |
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| T |
36958288 |
tttttt-gagtcctacttacaagcaccagccagatttttttttgttaccatacagagtttccaacttttcttatctactgatgtttattataatgcattt |
36958386 |
T |
|
| Q |
308 |
taccatgataattttgataaatatggagtagtatctatgagaattcatgcagctcatatagtttcttataaattca-ctagttattgtgttttcaatatc |
406 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36958387 |
taccatgatcattttgataaatatggagtagtatctatgagaattcatgcagctcatatagtttcttataaattcatctagttattgtgttttcaatatc |
36958486 |
T |
|
| Q |
407 |
aagaatgcggttcataatgcttctactgtaatttctttaagattattttcttattctaattctttaatacaatactcttttcctgaaaagtgggtgacaa |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36958487 |
aagaatgcggttcataatgcttctactgtaatttctttaagattattctcttattctaattcttcaatacaatactcttttcctgaaaagtgggtgacaa |
36958586 |
T |
|
| Q |
507 |
ctga-------cactaaagttttcaaatcaaaatgtgaactcatttatatatgaatgctctccattttctcccattttagccatataattgaaatatgta |
599 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36958587 |
ctgataacgggcactaaagttttcaaatcaaaatgtgaactcatttatatatgaatgctctccattttctcccattttagccatataattgaaatatgta |
36958686 |
T |
|
| Q |
600 |
aggnnnnnnnntccataacccaggggctgagcttggacaattaatatgacatttcatgaataaaacaacgtatttgcagctgatgttgtgaa |
691 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36958687 |
aggaaaaaaaatccataacccaggcgctgagcttggacaattaatatgacatttcatgaataaaacaacgtatttgcagctgatgttgtgaa |
36958778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 36972471 - 36972658
Alignment:
| Q |
9 |
agcagagatgaggatcgtgagtgaaagaacgaatggcagagtggcatggtttagtattatgtcgttaggtatctgcattggagtttcagctttacaattg |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
36972471 |
agcagagatgaggattgtgagtgaaagaacaaatggcagagtggcatggtttagtattatgtctttaggtatctgcattggagtttcagctttgcaattg |
36972570 |
T |
|
| Q |
109 |
tggcatttgaagagatttttccagaagaagaagcttatata-gttatgcaagtgttaatttaattttactagtgaaacaacaatcata |
195 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| ||||| | || ||||||| ||||||||||||||||||| |||||| |
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| T |
36972571 |
tggcatttgaagagattcttccagaagaagaagcttatataggttattccagcattaattttattttactagtgaaacaacgatcata |
36972658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 328 - 595
Target Start/End: Original strand, 36968803 - 36969065
Alignment:
| Q |
328 |
atatggagtagtatctatgagaattcatgcagctcatatagtttcttataaattca-ctagttattgtgttttcaatatcaagaatgcggttcataatgc |
426 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| || || ||| ||||||||||| ||||||||| ||||||||||| |
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| T |
36968803 |
atatggagtagtatatatgagagttcatgcagctcatatagtttcttataagttcatcttgtaattctgttttcaataacaagaatgcagttcataatgc |
36968902 |
T |
|
| Q |
427 |
ttctactgtaatttctttaagattattttcttattctaattctttaatacaatactcttttcctgaaaagtgggtgacaactgacactaaagttttcaaa |
526 |
Q |
| |
|
||||||| |||||||| |||||| ||| || ||| ||| ||||| ||||| |||| ||| |||| | |||| | | ||| |||||||||||| |
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| T |
36968903 |
ttctactctaatttctctaagataattctcctatcctagttcttcaatac---tctctattcatgaata----ctgaccatgggcaccaaagttttcaaa |
36968995 |
T |
|
| Q |
527 |
tcaaaatgtgaactcatttatatatgaatgctctccattttctccca-ttttagccatataattgaaata |
595 |
Q |
| |
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||||||||||||||||||| || || |||||||||||||||||| | ||||| ||| |||||||||||| |
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|
| T |
36968996 |
tcaaaatgtgaactcatttttacataaatgctctccattttctcatatttttatccagataattgaaata |
36969065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 866180 - 866317
Alignment:
| Q |
9 |
agcagagatgaggatcgtgagtgaaagaacgaatggcagagtggcatggtttagtattatgtcgttaggtatctgcattggagtttcagctttacaattg |
108 |
Q |
| |
|
||||| |||||||| ||||||||| ||| |||| |||||||||||||||||| ||||||| || ||||| ||||||| |||||||| ||| || ||| |
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|
| T |
866180 |
agcagggatgaggacagtgagtgaatcaacaaatgcaagagtggcatggtttagttttatgtctttgggtatttgcattgcagtttcagttttgcagttg |
866279 |
T |
|
| Q |
109 |
tggcatttgaagagatttttccagaagaagaagcttat |
146 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||| |
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| T |
866280 |
tggcatttgaaaagatacttccagaagaagaagcttat |
866317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 5869709 - 5869615
Alignment:
| Q |
106 |
ttgtggcatttgaagagatttttccagaagaagaagcttatatag-ttatgcaagtgttaatttaattttactagtgaaacaacaatcataaact |
199 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| |||||||| | ||||| |||||||| || |||| ||||||||||||| |||||||||| |
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| T |
5869709 |
ttgtggcacttgaagagattcctccagaagaagacgcttatattgactatgctagtgttaactttatttcactagtgaaacaaagatcataaact |
5869615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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