View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3410_low_55 (Length: 236)
Name: NF3410_low_55
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27685892 - 27686112
Alignment:
| Q |
1 |
aaaaaatgtagtgttacatgtcaatgatatattttgtgcatgcttgaatttgcgataaattttgcgagatcaaatcgtgccattgtaatttttccggtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27685892 |
aaaaaatgtagtgttacatgtcaatgatatattttgtgcatgcttgaatttgcgataaatttcgcgaaatcaaatcgtgccattgtaatttttccggtcg |
27685991 |
T |
|
| Q |
101 |
ataaagtatctaaactaaagtgaattgaaactaatcagattcatacctgaggttctatcaagccaaatagttgttccatgttgatccatgctttggtgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27685992 |
ataaagtatctaaactaaagtgaattgaaactaatcagattcatacctgaggttctatcaagccaaatagttgttccatgttgatccatgctttggtgtt |
27686091 |
T |
|
| Q |
201 |
gaggtccccaaaggtttctat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27686092 |
gaggtccccaaaggtttctat |
27686112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 41268615 - 41268543
Alignment:
| Q |
145 |
acctgaggttctatcaagccaaatagttgttccatgttgatccatgctttggtgttgaggtccccaaaggttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||| || | |||||||||||||| |||||| ||||| |
|
|
| T |
41268615 |
acctgaggttctatcaagccaaatagttaatgcattttgttctagtctttggtgttgagggccccaacggttt |
41268543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University