View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_6 (Length: 643)
Name: NF3410_low_6
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 229 - 640
Target Start/End: Original strand, 44691502 - 44691913
Alignment:
| Q |
229 |
gcagtgaaaagaaaatggggaatcttatgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttca |
328 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691502 |
gcagtgaaaagaaaatggggaatattgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttca |
44691601 |
T |
|
| Q |
329 |
gccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagaca |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
44691602 |
tccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcgggttcaacaattggatatcaaatgtgagaccaagaca |
44691701 |
T |
|
| Q |
429 |
aaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggata |
528 |
Q |
| |
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|||| | |||||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
44691702 |
aaggctggtttgttactttctaaaacttcaattataccaaatcttcatgccattccatgcttatcaatcacatggatatactttctctttggccaggata |
44691801 |
T |
|
| Q |
529 |
atttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttctctagcattcgccactttcagtacc |
628 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691802 |
atttttattaggtatcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttctctagcattcgccactttcagtact |
44691901 |
T |
|
| Q |
629 |
ctatgctactcc |
640 |
Q |
| |
|
||||| |||||| |
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| T |
44691902 |
ctatgatactcc |
44691913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 131 - 602
Target Start/End: Original strand, 44681727 - 44682193
Alignment:
| Q |
131 |
aagtgtttatatgaaatgatttgaatttcttgcatgataaaattatcatcctcatactttgcaatttttattc----tgtgttgataatgttttgaaaca |
226 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||||||| |||| ||||||||||| |||| | | | |||| |||| ||||| | |||| || || |
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|
| T |
44681727 |
aagtgtttattcggaatgatttgaaattcttgcatgatacaattctcatcctcataatttgtattctgtattgatgatgtgctgata-tattttcaagca |
44681825 |
T |
|
| Q |
227 |
ttgcagtgaaaagaaaatggggaatcttatgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgctt |
326 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44681826 |
ttgcagtgaaaagaaaatggggaatcttgtgtgttgtgtgcaagttgatcaatctcaagtggctatgaaagaaggttttggaaaatttgaaaaggtgctt |
44681925 |
T |
|
| Q |
327 |
cagccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaaga |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||| |
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|
| T |
44681926 |
cagccgggatgccattgcatgccatggttccttggaaaacgaattgctggtcatctctctcttcgggtacaacaattggatatcaagtgtgagacaaaga |
44682025 |
T |
|
| Q |
427 |
caaaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccagga |
526 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | | ||||||||| | |||| |||| |
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|
| T |
44682026 |
caaag----gtttgttactgtctcaaacatcaattaaaccaaatcttcatgtcattccatgcttatcaataacat--aaatactttctttttggctagga |
44682119 |
T |
|
| Q |
527 |
taatttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctcttt |
602 |
Q |
| |
|
| || || |||| |||||||||||| |||||||| ||||||| || | | ||||||||| ||||||||||||||| |
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|
| T |
44682120 |
t--ttgtttttagttgtcatcctggtactatgttaatttgatttctttgtgttttcttaaatatggttatctcttt |
44682193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 217 - 602
Target Start/End: Original strand, 44652802 - 44653179
Alignment:
| Q |
217 |
ttttgaaacattgcagtgaaaagaaaatggggaatcttatgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttga |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
44652802 |
ttttgaagcattgcagtgaaaagaaaatggggaatcttgtgtgttgtgtgcaagttgatcaatctcaagtggctatgaaagaaggttttggaaaatttga |
44652901 |
T |
|
| Q |
317 |
aaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44652902 |
aaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaaagaattgctggtcatctctctcttcgggtacaacaattggatatcaaatgt |
44653001 |
T |
|
| Q |
417 |
gagaccaagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctct |
516 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||| |||| || | | ||||||||| | |
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|
| T |
44653002 |
gagaccaagacaaaggttc----gttacggtctcaaacatcaattaaaccaagtgttcatgtcattccatgcttaccaataacat--aaatactttcttt |
44653095 |
T |
|
| Q |
517 |
atggccaggataatttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctcttt |
602 |
Q |
| |
|
|||| ||||| || || |||| ||||||||||||||||||||| |||||||||| | | ||||||||| ||||||||||||||| |
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|
| T |
44653096 |
ttggctaggat--ttgtttttagttgtcatcctggtgctatgttaatttgattcctttgtgttttcttaaatatggttatctcttt |
44653179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 222 - 603
Target Start/End: Original strand, 44631319 - 44631713
Alignment:
| Q |
222 |
aaacattgcagtgaaaagaaaatggggaatcttatgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaagg |
321 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| ||| |
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|
| T |
44631319 |
aaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaatttgaagagg |
44631418 |
T |
|
| Q |
322 |
tgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgtgagac |
421 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44631419 |
tgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaatgtgagac |
44631518 |
T |
|
| Q |
422 |
caagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattcc--atgctta--------tcaatcacttggatatactt |
511 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| || | |||||||| |
|
|
| T |
44631519 |
caagacaaaggt---tttgttactgtctcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataagtcaataacat--atatactt |
44631613 |
T |
|
| Q |
512 |
tctctatggccagga--------taatttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttc |
603 |
Q |
| |
|
|| || |||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
44631614 |
tcgctctggctaggattttattttcatttttattaggtgtcatcctggtgctatgttattttgatttctatatgttttcttaactatggttatctctttc |
44631713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 217 - 494
Target Start/End: Complemental strand, 44637528 - 44637251
Alignment:
| Q |
217 |
ttttgaaacattgcagtgaaaagaaaatggggaatcttatgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttga |
316 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
44637528 |
ttttgaaatgttgcagttaaaagaaaatggggaatcttttgtgttgtgtgcaagttgatcaatctacagtggctatgaaagagggttttggaaaatttga |
44637429 |
T |
|
| Q |
317 |
aaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgt |
416 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
44637428 |
agaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgctggtcatctctctcttcggctacagcaattggatataaaatgt |
44637329 |
T |
|
| Q |
417 |
gagaccaagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatca |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||| |||||| |
|
|
| T |
44637328 |
gagaccaagacaaaggttcgtttgttactgtctaaaacttcaatttaacgaaatcttcacgtcattccatgattatca |
44637251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 44625340 - 44625429
Alignment:
| Q |
18 |
attttaattacttcaaattctgcagtaaagaatattgataatagttacgatcaactgttttaccattgaaatgtgtccaagaattatact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44625340 |
attttaattacttcaaattctgcagtaaagaatattgataatagttacgatcaactgttttaccattgaaatgtgtccaagaattatact |
44625429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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