View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3410_low_60 (Length: 227)

Name: NF3410_low_60
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3410_low_60
NF3410_low_60
[»] chr7 (6 HSPs)
chr7 (39-227)||(42552645-42552833)
chr7 (1-43)||(42552929-42552971)
chr7 (1-43)||(48062086-48062128)
chr7 (4-44)||(6269395-6269435)
chr7 (3-43)||(15564941-15564981)
chr7 (4-44)||(44496805-44496845)
[»] chr3 (9 HSPs)
chr3 (4-44)||(33796295-33796335)
chr3 (4-46)||(40367635-40367677)
chr3 (1-43)||(48405440-48405482)
chr3 (4-41)||(27168684-27168721)
chr3 (4-44)||(26996345-26996385)
chr3 (5-41)||(28920053-28920089)
chr3 (5-41)||(39697225-39697261)
chr3 (5-41)||(43905005-43905041)
chr3 (4-44)||(48353025-48353065)
[»] chr8 (3 HSPs)
chr8 (4-43)||(45529248-45529287)
chr8 (1-41)||(10902736-10902776)
chr8 (4-44)||(13970948-13970988)
[»] chr6 (2 HSPs)
chr6 (1-43)||(17551378-17551420)
chr6 (4-44)||(13422997-13423037)
[»] chr2 (5 HSPs)
chr2 (1-43)||(7502427-7502469)
chr2 (1-38)||(7121413-7121450)
chr2 (4-44)||(6336281-6336321)
chr2 (4-44)||(12498638-12498678)
chr2 (4-44)||(16799701-16799741)
[»] chr1 (4 HSPs)
chr1 (1-43)||(50775156-50775198)
chr1 (4-44)||(1689420-1689460)
chr1 (4-44)||(30536020-30536060)
chr1 (4-44)||(30973581-30973621)
[»] chr4 (5 HSPs)
chr4 (1-38)||(6520831-6520868)
chr4 (10-43)||(50831764-50831797)
chr4 (4-41)||(52263881-52263918)
chr4 (1-41)||(149484-149524)
chr4 (4-44)||(44257732-44257772)
[»] scaffold0053 (1 HSPs)
scaffold0053 (4-44)||(12526-12566)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 39 - 227
Target Start/End: Complemental strand, 42552833 - 42552645
Alignment:
Q  39 attgtttagtttctgcactttaaattttgggctataattaggcctaannnnnnnnaatgaccctgctgcaaaattcacaaacattcagtagagaaggtat 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| ||||||||||||||||    
T  42552833 attgtttagtttctgcactttaaattttgggctataattaggcctaatttttttcaatgaccctgctgcaaaattcacaaacactcagtagagaaggtat 42552734  T
Q  139 tgcggattcgaccccacactcaaatatattagatgttcaatcttttgctatttgaactctacttaaaagacgatatattttacacatat 227  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42552733 tgcggattcgaccccacgctcaaatatattagatgttcaatcttttgctatttgaactctacttaaaagacgacatattttacacatat 42552645  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42552971 - 42552929
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaaattgt 43  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  42552971 aacataatatgaatatgagagggaaagttgttacaaaaattgt 42552929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48062128 - 48062086
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaaattgt 43  Q
    |||||||||||||||| |||| |||||||||||||||| ||||    
T  48062128 aacataatatgagtataagagagaaagttgttacaaaagttgt 48062086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 6269435 - 6269395
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||| |||||||||||| ||||||||| ||||||||||||    
T  6269435 ataatgtgagtatgagagagaaagttgtcacaaaaattgtt 6269395  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 15564981 - 15564941
Alignment:
Q  3 cataatatgagtatgagagggaaagttgttacaaaaattgt 43  Q
    |||||||||||||||||||  |||||||| |||||||||||    
T  15564981 cataatatgagtatgagagctaaagttgtcacaaaaattgt 15564941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 44496805 - 44496845
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||| |||||||||||| ||||||||| ||||||||||||    
T  44496805 ataatgtgagtatgagagagaaagttgtcacaaaaattgtt 44496845  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 33796335 - 33796295
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  33796335 ataatatgagtatgagagagaaagttgtcacaaaaattgtt 33796295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 40367677 - 40367635
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgttta 46  Q
    |||||||||||||||||| |||| |||| ||||||||||||||    
T  40367677 ataatatgagtatgagagagaaaattgtcacaaaaattgttta 40367635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48405482 - 48405440
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaaattgt 43  Q
    |||||||| |||||||||||| |||||||||||||||| ||||    
T  48405482 aacataatgtgagtatgagagagaaagttgttacaaaagttgt 48405440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 27168684 - 27168721
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaatt 41  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  27168684 ataatatgagtatgagagagaaagttgtcacaaaaatt 27168721  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 26996385 - 26996345
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||| |||||||||||| |||||||||||||||| |||||    
T  26996385 ataatgtgagtatgagagagaaagttgttacaaaagttgtt 26996345  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 28920053 - 28920089
Alignment:
Q  5 taatatgagtatgagagggaaagttgttacaaaaatt 41  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  28920053 taatatgagtatgagagagaaagttgtcacaaaaatt 28920089  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 39697225 - 39697261
Alignment:
Q  5 taatatgagtatgagagggaaagttgttacaaaaatt 41  Q
    |||| |||||||||||| |||||||||||||||||||    
T  39697225 taatgtgagtatgagagagaaagttgttacaaaaatt 39697261  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 43905041 - 43905005
Alignment:
Q  5 taatatgagtatgagagggaaagttgttacaaaaatt 41  Q
    |||| |||||||||||| |||||||||||||||||||    
T  43905041 taatgtgagtatgagagagaaagttgttacaaaaatt 43905005  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 48353065 - 48353025
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    |||||||||||||||||| ||||||||| |||||| |||||    
T  48353065 ataatatgagtatgagagagaaagttgtcacaaaagttgtt 48353025  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 45529248 - 45529287
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgt 43  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  45529248 ataatgtgagtatgagagagaaagttgttacaaaaattgt 45529287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10902776 - 10902736
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaaatt 41  Q
    |||||||| ||||| |||||| |||||||||||||||||||    
T  10902776 aacataatgtgagtgtgagagagaaagttgttacaaaaatt 10902736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 13970988 - 13970948
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    |||||||||||||||||| ||||||||| |||||| |||||    
T  13970988 ataatatgagtatgagagagaaagttgtcacaaaagttgtt 13970948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17551378 - 17551420
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaaattgt 43  Q
    |||||||| |||||||||||| |||||||||||||||| ||||    
T  17551378 aacataatgtgagtatgagagagaaagttgttacaaaagttgt 17551420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 13423037 - 13422997
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||| |||||||||||| ||||||||| ||||||||||||    
T  13423037 ataatgtgagtatgagagagaaagttgtcacaaaaattgtt 13422997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7502427 - 7502469
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaaattgt 43  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||    
T  7502427 aacattatatgagtatgagagagaaagttgtcacaaaaattgt 7502469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7121450 - 7121413
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaa 38  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  7121450 aacataatgtgagtatgagagagaaagttgttacaaaa 7121413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 6336321 - 6336281
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    |||||||||||||||||| ||||||||| |||||| |||||    
T  6336321 ataatatgagtatgagagagaaagttgtcacaaaagttgtt 6336281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 12498638 - 12498678
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||||||||||||||||  |||||||| ||||||||||||    
T  12498638 ataatatgagtatgagagaaaaagttgtcacaaaaattgtt 12498678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 16799741 - 16799701
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    |||||||||||||||||| ||||||| | ||||||||||||    
T  16799741 ataatatgagtatgagagagaaagttatcacaaaaattgtt 16799701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 50775156 - 50775198
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaaattgt 43  Q
    |||||||| |||||||||||| ||||||||| |||||||||||    
T  50775156 aacataatgtgagtatgagagagaaagttgtcacaaaaattgt 50775198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 1689460 - 1689420
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||| |||||||||||| ||||||||| ||||||||||||    
T  1689460 ataatgtgagtatgagagagaaagttgtcacaaaaattgtt 1689420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 30536060 - 30536020
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||| |||||||||||| ||||||||| ||||||||||||    
T  30536060 ataatgtgagtatgagagagaaagttgtcacaaaaattgtt 30536020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 30973621 - 30973581
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||||||||||||| || ||||||||| ||||||||||||    
T  30973621 ataatatgagtatgaaagagaaagttgtcacaaaaattgtt 30973581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6520831 - 6520868
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaa 38  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  6520831 aacataatgtgagtatgagagagaaagttgttacaaaa 6520868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 50831764 - 50831797
Alignment:
Q  10 tgagtatgagagggaaagttgttacaaaaattgt 43  Q
    ||||||||||||||||||||||||||||| ||||    
T  50831764 tgagtatgagagggaaagttgttacaaaagttgt 50831797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 52263881 - 52263918
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaatt 41  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  52263881 ataatatgagtatgagagagaaagttgttataaaaatt 52263918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 149484 - 149524
Alignment:
Q  1 aacataatatgagtatgagagggaaagttgttacaaaaatt 41  Q
    |||||||| |||||||||||| ||||||||| |||||||||    
T  149484 aacataatgtgagtatgagagagaaagttgtcacaaaaatt 149524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 44257732 - 44257772
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||| |||||||||||| ||||||||| ||||||||||||    
T  44257732 ataatgtgagtatgagagagaaagttgtcacaaaaattgtt 44257772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 12566 - 12526
Alignment:
Q  4 ataatatgagtatgagagggaaagttgttacaaaaattgtt 44  Q
    ||||||||||||| |||| ||||||||| ||||||||||||    
T  12566 ataatatgagtataagagagaaagttgtcacaaaaattgtt 12526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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