View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_63 (Length: 213)
Name: NF3410_low_63
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_63 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 3567797 - 3567616
Alignment:
| Q |
12 |
gagatgaagaaggctcggttgtagagaaacagtgccagccacccaaatacgacctaagtcctcaggttgctcaaaaagaaaatcataatacccccgacca |
111 |
Q |
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| T |
3567797 |
gagacgaagaaggctcggttgtagagaaacagtgccagccacccaaatacgacctaagtcctcaggttgctcaaaaagaaaatcataatacccccgacca |
3567698 |
T |
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| Q |
112 |
agtgaaaccattttctatttgtgaaccatcttccaaacctttcctaatttagtcgccaaatcaagcgccgtgtatggtttgt |
193 |
Q |
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| T |
3567697 |
agtgaaaccattttctatttgtgaaccatcttccaaacctttcctaatttagtcgccaaatcaagcgccgtgtatggtttgt |
3567616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 10431536 - 10431373
Alignment:
| Q |
28 |
ggttgtagagaaacagtgccagccacccaaatacgacctaagtcctcaggttgctcaaaaagaaaatcataatacccccgaccaagtgaaaccattttct |
127 |
Q |
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| T |
10431536 |
ggttgtagagaaacagtgccagccgcttaaatatggtttaaatcatcaggatgctcaaaaagaaaattataaaacccccttctgagtgaaaccatcttcc |
10431437 |
T |
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| Q |
128 |
atttgtgaaccatcttccaaacctttcctaatttagtcgccaaatcaagcgccgtgtatggttt |
191 |
Q |
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| T |
10431436 |
atttatgtaccatcttccaaaccttgcctaatttggaagccaaatcatgcgtcgtgtaaggttt |
10431373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 24371753 - 24371611
Alignment:
| Q |
29 |
gttgtagagaaacagtgccagccacccaaatacgacctaagtcctcaggttgctcaaaaagaaaatcataatacccccgaccaagtgaaaccattttcta |
128 |
Q |
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| T |
24371753 |
gttgtagagaaatggtgccaacctcccaaatacgacgcaagtcattaggatgctaaaaaataaaatcataataacctattccaagtgaaatcattttcca |
24371654 |
T |
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| Q |
129 |
tttgtgaaccatcttccaaacctttcctaatttagtcgccaaat |
172 |
Q |
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| T |
24371653 |
tttgtgaaccatcttcc-aaccttgcctaacttagcagccaaat |
24371611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 14409 - 14291
Alignment:
| Q |
73 |
tcaggttgctcaaaaagaaaatcataatacccccgaccaagtgaaaccattttctatttgtgaaccatcttccaaacctttcctaatttagtcgccaaat |
172 |
Q |
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| T |
14409 |
tcaggatgctcaaacataaaatcataatatcctctaccaagcgaaaccatcgtccattggtgaaccatcttccaaaacttgccaaatttagaagccaaat |
14310 |
T |
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| Q |
173 |
caagcgccgtgtatggttt |
191 |
Q |
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| T |
14309 |
cacgagctgtgtaaggttt |
14291 |
T |
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