View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3410_low_65 (Length: 201)

Name: NF3410_low_65
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3410_low_65
NF3410_low_65
[»] chr3 (15 HSPs)
chr3 (1-186)||(23448976-23449161)
chr3 (1-186)||(23500739-23500924)
chr3 (1-148)||(23406493-23406640)
chr3 (1-157)||(23353635-23353791)
chr3 (1-158)||(23435205-23435362)
chr3 (1-158)||(23455768-23455925)
chr3 (1-148)||(23465147-23465294)
chr3 (1-152)||(23441620-23441771)
chr3 (1-152)||(23474152-23474303)
chr3 (5-157)||(23480495-23480647)
chr3 (1-154)||(23388127-23388280)
chr3 (11-96)||(36034071-36034156)
chr3 (11-96)||(36017165-36017250)
chr3 (22-142)||(36004456-36004576)
chr3 (1-72)||(21088395-21088466)
[»] scaffold0201 (2 HSPs)
scaffold0201 (1-158)||(13311-13468)
scaffold0201 (158-186)||(13244-13272)
[»] scaffold0570 (2 HSPs)
scaffold0570 (2-158)||(9873-10029)
scaffold0570 (15-86)||(3462-3533)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 23449161 - 23448976
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23449161 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcaagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 23449062  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaactatcctaagtaaatcaataaactatatcctatg 186  Q
     ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23449061 gcagctaatttggttggttgggactctcgaaattataggtaagtaaaacgaactatcctaagtaaatcaataaactatatcctatg 23448976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 23500924 - 23500739
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23500924 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 23500825  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaactatcctaagtaaatcaataaactatatcctatg 186  Q
     ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23500824 gcagctaatttggttggttgggactctcgaaattacaggtaagtaaaacgaactatcctaagtaaatcaataaactatatcctatg 23500739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 23406640 - 23406493
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  23406640 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttaaagcacaataatgacaagttgaagaaatggaaagattctctcactgag 23406541  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaa 148  Q
     ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  23406540 gcagctaatttggttggttgggactctcaaaattataggcaagtaaaa 23406493  T

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Target: chr3; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 23353791 - 23353635
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||    
T  23353791 gaagcagaccgggagttacaagcaagcctttgaaaaacataagcgagatttgaagcacaataatgacaagttggagaaatggaaagctgctctcaccgag 23353692  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaactatc 157  Q
     |||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||    
T  23353691 gcagctaatttagttggttgggactctcgaaattataggtgagtaaaacgaactatc 23353635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 23435362 - 23435205
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||   ||||||| |||    
T  23435362 gaagcagaccgggagttacaagcaagcatttgcaaaacataagcgagatttgaagcacaataatgacaagttgcataaatggaaagccgctctcactgag 23435263  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaactatcc 158  Q
     |||||||||| |||||||| |||||||||||||||||||||| ||||||| ||||||    
T  23435262 gcagctaatttagttggttgggactctcaaaattataggtaagaaaaacgacctatcc 23435205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 23455925 - 23455768
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||  |||||||| |||    
T  23455925 gaagcaaaccgggagttacaagcaagcctttgcaaaacataagcaagatttgaagcacaataatgccaagttggagaaatggaaagcctctctcactgag 23455826  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaactatcc 158  Q
     |||||||||| ||||| || ||||||||||||||||||||| |||||| ||||||||    
T  23455825 gcagctaatttagttggatgggactctcaaaattataggtaaataaaacaaactatcc 23455768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 23465294 - 23465147
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |||||||||||| | ||||||| ||     
T  23465294 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgaaatttgaagcacaataacgataagttggagaaatggaaagctgctctcactgat 23465195  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaa 148  Q
     |||||||||| |||||||| ||||||| |||||||||||||||||||    
T  23465194 gcagctaatttagttggttgggactctcgaaattataggtaagtaaaa 23465147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 23441771 - 23441620
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||  || ||||||||||| | ||||| |||    
T  23441771 gaagcagactgggagttacaagcaagccttcgcaaaacataagcgagatttgaagagcaataatgacaagttacaggaatggaaagatgcactcactgag 23441672  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaa 152  Q
     |||||| ||| |||||||| |||||||||||||| ||||||  ||||||||    
T  23441671 gcagctagtttagttggttgggactctcaaaattacaggtaaacaaaacgaa 23441620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 23474303 - 23474152
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||  || ||||||||||| | ||||| |||    
T  23474303 gaagcagactgggagttacaagcaagccttcgcaaaacataagcgagatttgaagagcaataatgacaagttacaggaatggaaagatgcactcactgag 23474204  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaa 152  Q
     |||||| ||| |||||||| |||||||||||||| ||||||  ||||||||    
T  23474203 gcagctagtttagttggttgggactctcaaaattacaggtaaacaaaacgaa 23474152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 23480647 - 23480495
Alignment:
Q  5 cagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgagacag 104  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||  || |||||||||   ||||||| ||| |||    
T  23480647 cagaccgggagttacgagcaagcttttgcaaaacataagcgagatttgaagagcaataatgacaagttacaggaatggaaagccgctctcactgaggcag 23480548  T
Q  105 ctaatttggttggttgagactctcaaaattataggtaagtaaaacgaactatc 157  Q
    ||| ||| |  ||||| |||| |||||||| |  |||||||||||||||||||    
T  23480547 ctagtttaggcggttgggactttcaaaattttgagtaagtaaaacgaactatc 23480495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 23388280 - 23388127
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    ||||||||| ||||||||| ||||||||||  ||||||||| |||||||||||||| |||||||||||||||  || |||||||||   ||||  |||||    
T  23388280 gaagcagactgggagttacgagcaagccttcacaaaacatatgcgagatttgaagctcaataatgacaagttacaggaatggaaagccgctcttgccgag 23388181  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaact 154  Q
     |||||| ||| |||||||| |||| ||| ||||| |||||||| ||| |||||    
T  23388180 gcagctagtttagttggttgggactttcagaattacaggtaagttaaaggaact 23388127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 36034156 - 36034071
Alignment:
Q  11 gggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcac 96  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||||||| || ||||||||| |||||| ||||||| |||||||    
T  36034156 gggagttacaagcaagcctttgcaaagcataagcaaaatttgaagcacaacaaagacaagttgcagaaatagaaagatgctctcac 36034071  T

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Target: chr3; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 36017250 - 36017165
Alignment:
Q  11 gggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcac 96  Q
    ||||||||||||||||||||||||||  |||||| | ||||||||||||| || ||||||||| |||||| ||||||| |||||||    
T  36017250 gggagttacaagcaagcctttgcaaagaataagcaaaatttgaagcacaacaaagacaagttgcagaaatagaaagatgctctcac 36017165  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 36004576 - 36004456
Alignment:
Q  22 gcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgagacagctaatttggttggttga 121  Q
    |||||||||||||||||||   |||||||||||||| || || || | ||| ||||||||||||||| |||| || ||  |||| ||||| |  || ||     
T  36004576 gcaagcctttgcaaaacatgcacgagatttgaagcagaacaaagaaatgttaaagaaatggaaagatgctctaactgaagcagccaatttagcagggtgg 36004477  T
Q  122 gactctcaaaattataggtaa 142  Q
     ||||||||||||| ||||||    
T  36004476 cactctcaaaattacaggtaa 36004456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 21088466 - 21088395
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagtt 72  Q
    |||||||||  ||||||||||| || |||||| ||| |||| ||||||||| ||| || |||||||||||||    
T  21088466 gaagcagacttggagttacaagaaaacctttgaaaagcatatgcgagatttaaagaacgataatgacaagtt 21088395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 13468 - 13311
Alignment:
Q  1 gaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgag 100  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||| | ||||||| ||     
T  13468 gaagcagactggaagttaccagcaagcctttgcaaaacataagcgagatttgaagcacaataacgataagttggagaaatggaaagctgctctcactgat 13369  T
Q  101 acagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaactatcc 158  Q
     |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||    
T  13368 gcagctaatttagttggttgggactctcgaaattataggtaagtaaaacgaactatcc 13311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 13272 - 13244
Alignment:
Q  158 ctaagtaaatcaataaactatatcctatg 186  Q
    |||||||||||||||||||||||||||||    
T  13272 ctaagtaaatcaataaactatatcctatg 13244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 9873 - 10029
Alignment:
Q  2 aagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaga 101  Q
    |||||||| || |||||| |||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| |||||||   |||||||||||     
T  9873 aagcagactggaagttacgagcaagcctttgaaaaacataagcgagatttgaagagcaataatgacaagttgaagaactggaaagccgctctcaccgagg 9972  T
Q  102 cagctaatttggttggttgagactctcaaaattataggtaagtaaaacgaactatcc 158  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||    
T  9973 cagctaatttagttggttgggactctcgaaattataggtaagtaaaacgaactatcc 10029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 3462 - 3533
Alignment:
Q  15 gttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaag 86  Q
    ||||||| | |||||| | |||||||| ||||||  ||||||||||||||||||||||| ||||||||||||    
T  3462 gttacaaaccagccttcgaaaaacataggcgagaactgaagcacaataatgacaagttgcagaaatggaaag 3533  T

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