View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_7 (Length: 606)
Name: NF3410_low_7
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 9e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 37653536 - 37653644
Alignment:
| Q |
10 |
catcatcatgattctaaattcatagaaatcaattctgccatcaccatcggtgtcaacgcagccgatcattcttccacatttggccaaggagcactcttca |
109 |
Q |
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| T |
37653536 |
catcatcatgattctaaattcatcgaaatcaattctgccatcaccatcggtgtcaacgcagcctatcattcttccacatttggccaaggagcactcttca |
37653635 |
T |
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| Q |
110 |
ccaaagctt |
118 |
Q |
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||||||||| |
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| T |
37653636 |
ccaaagctt |
37653644 |
T |
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Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 37655371 - 37655757
Alignment:
| Q |
10 |
catcatcatgattctaaattcatagaaatcaattctgccatcaccatcggtgtcaacgcagccgatcattcttccacatttggccaaggagcactcttca |
109 |
Q |
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|||||||||||||||||| || | |||||||| || ||||||||||| | ||||||| || || |||||| |||||| ||||||| ||||||| | |
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| T |
37655371 |
catcatcatgattctaaaatcctcaaaatcaatcctaccatcaccatcactatcaacgcgaccaataattctttcacattcatccaaggaacactcttga |
37655470 |
T |
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| Q |
110 |
ccaaagcttttcataaccgtattgagctcctccacggtgatgaaaccgtcaccatcaatgtcaaaaacatcaaaggcgttttttatgttttctatgtcct |
209 |
Q |
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|||| |||| |||||| ||| || ||||||| | | ||||||||||| || |||||||||||| | ||| ||| | | | |||| ||||||||| |||| |
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| T |
37655471 |
ccaatgcttctcataagcgtgttaagctccttcgccgtgatgaaaccatcgccatcaatgtcatacacagaaaacgtgctctttaggttttctatttcct |
37655570 |
T |
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| Q |
210 |
cttcagtttcagatttcgtggtgcttagctcaataaactcttggagtgtgataaatcctcc------tccgtcaacatcatctcctatacccaactttcc |
303 |
Q |
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|||||| |||| | | || ||||||||||||||||||||||| || |||||| ||||||| || ||||| ||||||||||| | |||||||| |
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| T |
37655571 |
cttcagattcatagcttgttgtgcttagctcaataaactcttgaagcgtgatagatcctccatcaatgccatcaacgtcatctcctatttctaactttcc |
37655670 |
T |
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| Q |
304 |
cattatcgctcttagatcagatatcgagaccttgccgtcaccttctttggtctccaatttcttgaagatttttcccatctccaattccaa |
393 |
Q |
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|||||| ||| ||||| || ||||| | |||||| ||||| ||| || |||||||||||||||| |||| |||||||| ||||||| |
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| T |
37655671 |
tgttatcgatctcagatctgagatcgatatcttgccatcaccgtct---gtgtccaatttcttgaagagtttttccatctccgattccaa |
37655757 |
T |
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