View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3410_low_8 (Length: 564)
Name: NF3410_low_8
Description: NF3410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3410_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 16 - 564
Target Start/End: Original strand, 11174547 - 11175095
Alignment:
| Q |
16 |
ataagacattcatattagcatttatgcattagaagtttgaataatgtaaccattgtatgaagaatccaaatagaaaataaatttatgacaagtaatgtgc |
115 |
Q |
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| T |
11174547 |
ataagacattcatattagcatttatgcattagaagtttgaataatgtaaccattgtatgaagaatccaaatagaaaataaatttatgacaagtaacgtgc |
11174646 |
T |
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| Q |
116 |
aagcaaataagataccctatttaatagaaagttcattttaggtacctcatttataacctatactatcatctatgtgccttcaatggaaagcatttcctat |
215 |
Q |
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| T |
11174647 |
aagcaaataagataccctatttaatagaaagttcattttaggtacctcatatataacctatactatcatctatgtgccttcaatggaaagcatttcctat |
11174746 |
T |
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| Q |
216 |
ttgtagaaaatttcaacaatatctatccaaatatgattgtcaacatattcacacataaatcagaaatatatggttcaaagtagttgatataggtatcaaa |
315 |
Q |
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| T |
11174747 |
ttgtagaaaatttcaacaatatctatccaaatatgattgtcaacatattcacatataaatcagaaatatatggttcaaagtagttgatataggtatcaaa |
11174846 |
T |
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| Q |
316 |
aagcgtctcaaagaagtcatactctctaataagataatccaaccaagatttgcttacagttttaaaaagttatgtgcctagctcaaatttgcatgcaata |
415 |
Q |
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| T |
11174847 |
aagcgtctcaaagaaggtatactctctaataagataatccaaccaagatttgcttacagttttaaaaagttatgtgcctagctcaaatttgcatgcaata |
11174946 |
T |
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| Q |
416 |
gttgctgacaaggaatagcatgaaaatgaggtgcaagtgtaactaataagcatttataatgtgaacaaaaatagactgccactaatttttgggtgaactc |
515 |
Q |
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| T |
11174947 |
gttgctgacaaggaatagcatgaaaatgaggtgtaagtgtaactaataagcatttataatgtgaacaaaaatagactgccactaatttttgggtgaactc |
11175046 |
T |
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| Q |
516 |
catgtgtattttcctactaaggcaatcctatttgacaagataggcagga |
564 |
Q |
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| T |
11175047 |
catgtgtactttcctactaaggcaatcctatttgataagataggcagga |
11175095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 18948150 - 18948215
Alignment:
| Q |
100 |
atgacaagtaatgtgcaagcaaataagataccctatttaatagaaagttcattttaggtacctcat |
165 |
Q |
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| T |
18948150 |
atgacaactaatgtgcaagaaaataagacactttatttaattgaaaatccattttaggtacctcat |
18948215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 18968076 - 18968011
Alignment:
| Q |
100 |
atgacaagtaatgtgcaagcaaataagataccctatttaatagaaagttcattttaggtacctcat |
165 |
Q |
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| T |
18968076 |
atgacaattaatgtgcaagcaaataagacactttatttaattgaaaatcaattttaggtacctcat |
18968011 |
T |
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