View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3411_high_4 (Length: 291)
Name: NF3411_high_4
Description: NF3411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3411_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 11381076 - 11381212
Alignment:
| Q |
19 |
aaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgtcgttttataaggttacgattgtgagagaaattaggta |
118 |
Q |
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| T |
11381076 |
aaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgtgagagaaattaggga |
11381175 |
T |
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| Q |
119 |
aattgctgcatatatagtaaatttgttcaaattatta |
155 |
Q |
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| T |
11381176 |
aattgctgcatatatagttaatttgttcaaataatta |
11381212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 11404476 - 11404612
Alignment:
| Q |
19 |
aaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgtcgttttataaggttacgattgtgagagaaattaggta |
118 |
Q |
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| T |
11404476 |
aaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgtgagagaaattaggga |
11404575 |
T |
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| Q |
119 |
aattgctgcatatatagtaaatttgttcaaattatta |
155 |
Q |
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| T |
11404576 |
aaatgctgcaaatatagttaatttgttcaaataatta |
11404612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 11396454 - 11396582
Alignment:
| Q |
19 |
aaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgtcgttttataaggttacgattgtgagagaaattaggta |
118 |
Q |
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| T |
11396454 |
aaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgtgagaaaagttaggga |
11396553 |
T |
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| Q |
119 |
aattgctgcatatatagtaaatttgttcaaa |
149 |
Q |
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| T |
11396554 |
aattgtt--ttatatagttaatttgttcaaa |
11396582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 11453306 - 11453411
Alignment:
| Q |
18 |
gaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgtcgttttataaggttacgattgtgagagaaattaggt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||| ||||| |
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| T |
11453306 |
gaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtagtgaataccgttttataaggttaagattgtgagagaagttaggg |
11453405 |
T |
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| Q |
118 |
aaattg |
123 |
Q |
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|||||| |
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| T |
11453406 |
aaattg |
11453411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 11404642 - 11404704
Alignment:
| Q |
214 |
gtgtggttaaacggggtctaagccctgccagtcatg-ttttttatctctccaacataggtcct |
275 |
Q |
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| T |
11404642 |
gtgtggttaaacggggcctaagccctgccagtcatgtttttttatctctccaacataggtcct |
11404704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 11381246 - 11381303
Alignment:
| Q |
218 |
ggttaaacggggtctaagccctgccagtcatgttttttatctctccaacataggtcctg |
276 |
Q |
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| T |
11381246 |
ggttaaacggggcctaagccctgccagtcat-ttttttatctctccaacataggtcctg |
11381303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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