View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3411_high_6 (Length: 250)

Name: NF3411_high_6
Description: NF3411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3411_high_6
NF3411_high_6
[»] chr5 (2 HSPs)
chr5 (1-240)||(29090938-29091180)
chr5 (15-205)||(29083649-29083843)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29091180 - 29090938
Alignment:
Q  1 ttagccgcaaaatgaactttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttactaatatttcatgagaaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  29091180 ttagccgcaaaatgaactttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttac---tatttcatgagaaaaa 29091084  T
Q  101 tgaaaatgtacaaataagga----------aatatctttatcaaagaaatctactacatagaaacctatgacaagagaatcatgtcaggaaatggggatt 190  Q
    ||||||||||||||||| ||          ||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  29091083 tgaaaatgtacaaataaagaaatctatctgaatatctttatcaaagaaat---ctatatagaaacctatgacaagagaatcatgtcaggaaat-gggatt 29090988  T
Q  191 cgaggtttcaaaaagttgtttaggataatcctataaagaagtgacctatg 240  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29090987 cgaggtttcaaaaagttggttaggataatcctataaagaagtgacctatg 29090938  T

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Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 29083843 - 29083649
Alignment:
Q  15 aactttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttactaatatttcatgagaaaaatgaaaatgtacaaa 114  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||    
T  29083843 aactttatgggttaagtatttcttatattgtggatagcctaacttagaagcaattctttgcctttgc---tatttcatgagaaaaatgaaaatgtacaaa 29083747  T
Q  115 taaggaaat----------atctttatcaaagaaatctactacatagaaacctatgacaagagaatcatgtcaggaaatggggattcgaggtttcaaaaa 204  Q
    |||||||||          |||||||||||||||||   ||| || |||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  29083746 taaggaaatctatatgaaaatctttatcaaagaaat---ctatatggaaacctatgacaagaaaatcatgtcaggaaatggggattcgagattgcaaaaa 29083650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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