View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3411_low_1 (Length: 471)
Name: NF3411_low_1
Description: NF3411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3411_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 327 - 455
Target Start/End: Original strand, 53798770 - 53798898
Alignment:
| Q |
327 |
caaatactcttctagacataagttagattaaaatatactataacattggatgctcattgcgaccacttaactaatttaattccaatcatctgcgttgaga |
426 |
Q |
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| T |
53798770 |
caaatactcttctagacataagttagattaaaatatactataacattggatgctcattgcgaccacttaactaatttaattccaatcatctgcgttgaga |
53798869 |
T |
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| Q |
427 |
gacaaaggcatcaaattgtatatatacct |
455 |
Q |
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| T |
53798870 |
gacaaaggcatcaaattgtatatatacct |
53798898 |
T |
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Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 53798549 - 53798650
Alignment:
| Q |
1 |
agaaagtttagacaagtacattatattaa-tgtgaggacgtgtagaaatatcgtgaatcaaaacataaaattagtgatgtaggtaccaacaatgacatac |
99 |
Q |
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| T |
53798549 |
agaaagtttagacaagtacattatattaaatgtgaggacgtgtagaaatatcgtgaatcaaaacataaaattagtgatataggtaccaacaatgacatac |
53798648 |
T |
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| Q |
100 |
ta |
101 |
Q |
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|| |
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| T |
53798649 |
ta |
53798650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 10227445 - 10227404
Alignment:
| Q |
143 |
gtaatttaaagtttgactgttagataaatataatatgatcaa |
184 |
Q |
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| T |
10227445 |
gtaatttaaagtttgactgcaagataaatataatttgatcaa |
10227404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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