View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3411_low_3 (Length: 312)
Name: NF3411_low_3
Description: NF3411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3411_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 37893264 - 37892959
Alignment:
| Q |
7 |
atacgatcagcttcacgtgtcttttgatcaaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893264 |
atacgatcagcttcacgtgtcttttgatcaaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtct |
37893165 |
T |
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| Q |
107 |
aagctcttgttggtgaatgaaatgaaatatggggttgtgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37893164 |
aagctcttgttggtgaatgaaatgaaatatggggttatgttacgtatatatacacattgatgggttatattttcttccaatttagttcttccttttcgtg |
37893065 |
T |
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| Q |
207 |
taaggattgatttatgtcaaggaaaatctcaagttgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagt |
306 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893064 |
taaggattgatttatgtcaaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagt |
37892965 |
T |
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| Q |
307 |
cacgtt |
312 |
Q |
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|||||| |
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| T |
37892964 |
cacgtt |
37892959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 37188367 - 37188062
Alignment:
| Q |
7 |
atacgatcagcttcacgtgtcttttgatcaaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188367 |
atacgatcagcttcacgtgtcttttgatcaaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtct |
37188268 |
T |
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| Q |
107 |
aagctcttgttggtgaatgaaatgaaatatggggttgtgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188267 |
aagctcttgttggtgaatgaaatgaaatatggggttatgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtg |
37188168 |
T |
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| Q |
207 |
taaggattgatttatgtcaaggaaaatctcaagttgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagt |
306 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37188167 |
taaggattgatttatgtcaaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgttgagt |
37188068 |
T |
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| Q |
307 |
cacgtt |
312 |
Q |
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||||| |
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| T |
37188067 |
aacgtt |
37188062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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