View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3411_low_6 (Length: 250)

Name: NF3411_low_6
Description: NF3411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3411_low_6
NF3411_low_6
[»] chr5 (2 HSPs)
chr5 (1-240)||(29090938-29091180)
chr5 (15-205)||(29083649-29083843)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29091180 - 29090938
Alignment:
Q  1 ttagccgcaaaatgaactttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttactaatatttcatgagaaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  29091180 ttagccgcaaaatgaactttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttac---tatttcatgagaaaaa 29091084  T
Q  101 tgaaaatgtacaaataagga----------aatatctttatcaaagaaatctactacatagaaacctatgacaagagaatcatgtcaggaaatggggatt 190  Q
    ||||||||||||||||| ||          ||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  29091083 tgaaaatgtacaaataaagaaatctatctgaatatctttatcaaagaaat---ctatatagaaacctatgacaagagaatcatgtcaggaaat-gggatt 29090988  T
Q  191 cgaggtttcaaaaagttgtttaggataatcctataaagaagtgacctatg 240  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29090987 cgaggtttcaaaaagttggttaggataatcctataaagaagtgacctatg 29090938  T

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Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 29083843 - 29083649
Alignment:
Q  15 aactttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttactaatatttcatgagaaaaatgaaaatgtacaaa 114  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||    
T  29083843 aactttatgggttaagtatttcttatattgtggatagcctaacttagaagcaattctttgcctttgc---tatttcatgagaaaaatgaaaatgtacaaa 29083747  T
Q  115 taaggaaat----------atctttatcaaagaaatctactacatagaaacctatgacaagagaatcatgtcaggaaatggggattcgaggtttcaaaaa 204  Q
    |||||||||          |||||||||||||||||   ||| || |||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  29083746 taaggaaatctatatgaaaatctttatcaaagaaat---ctatatggaaacctatgacaagaaaatcatgtcaggaaatggggattcgagattgcaaaaa 29083650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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