View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3412_high_2 (Length: 234)
Name: NF3412_high_2
Description: NF3412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3412_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 32978343 - 32978139
Alignment:
| Q |
16 |
atatgcagttgtttctgcactatcccttctttgcaaagaacaatacttgattccttcttactttgtcctttctatagaatccccctacgttataatacat |
115 |
Q |
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| T |
32978343 |
atatgcagttgtttctgcactatcccttctttgcaaagaacaatacttgattccttcttactttgtcctttctatagaatccccctacgttata-tacat |
32978245 |
T |
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| Q |
116 |
caaagaactaaaaagaccaggaccatttagacatggtaccacatcaaatgcacacttttcaaaaacccttgtatttgaattgggccagttaggctttgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32978244 |
caaagaactaaaaagaccaggaccatttagacatggtaccacatcaaatgcacacttttcaaaaacccttgtatttgaattgggccagttaggctttgtt |
32978145 |
T |
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| Q |
216 |
tcaact |
221 |
Q |
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|||||| |
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| T |
32978144 |
tcaact |
32978139 |
T |
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