View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3412_low_1 (Length: 456)
Name: NF3412_low_1
Description: NF3412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3412_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 41620201 - 41620081
Alignment:
| Q |
14 |
cagagaaaacaaaaattcccatgttataaaaacaagtagtaaaaccagtttgatttgtgaactttcatagtaaacaatataagtcagtggcattcctata |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41620201 |
cagagaaaacaaaaattcccatgttataaaaacaagtagtaaaaccagtttgatttgtgaactttcatagtaaacaatataagtcagtggcattcctata |
41620102 |
T |
|
| Q |
114 |
accttttaaaaagatggatta |
134 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41620101 |
accttttaaaaagatggatta |
41620081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 42121391 - 42121427
Alignment:
| Q |
53 |
taaaaccagtttgatttgtgaactttcatagtaaaca |
89 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
42121391 |
taaaatcagtttgattggtgaactttcatagtaaaca |
42121427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University