View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3413_high_1 (Length: 1001)

Name: NF3413_high_1
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3413_high_1
NF3413_high_1
[»] chr5 (18 HSPs)
chr5 (17-382)||(14741965-14742331)
chr5 (671-967)||(14744977-14745278)
chr5 (111-353)||(15010407-15010650)
chr5 (111-324)||(14290391-14290604)
chr5 (111-353)||(15053333-15053579)
chr5 (254-385)||(14283223-14283354)
chr5 (411-482)||(14741890-14741961)
chr5 (628-684)||(14741622-14741678)
chr5 (411-475)||(15053617-15053681)
chr5 (628-681)||(14283665-14283718)
chr5 (408-469)||(15010685-15010746)
chr5 (128-237)||(15056144-15056253)
chr5 (158-247)||(14283104-14283196)
chr5 (416-478)||(14283356-14283417)
chr5 (545-595)||(14741773-14741823)
chr5 (641-684)||(15010988-15011031)
chr5 (628-682)||(14290921-14290974)
chr5 (438-478)||(14290660-14290699)
[»] chr8 (1 HSPs)
chr8 (628-684)||(23875951-23876007)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 14742331 - 14741965
Alignment:
Q  17 agaattcttgcatcatgttttgtacattggatccgccacaaccaagccataaatatgccaattatacaaattaaccttcacttatgtcattcaagcagga 116  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||  || |||| ||||||||||||||||||||||||||||||||||||||||    
T  14742331 agaattcttgcatcatgttttgtacattggatctgccgcaaccaagccatggatctgccgattatacaaattaaccttcacttatgtcattcaagcagga 14742232  T
Q  117 agtaaaacagcatcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttctttgtggag 216  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  14742231 agtaaagcagcatcaggaaggcacatctggagcatttgatccaagcagtagatctactggtatgcacacatcctatttttaattgagtttctttatggag 14742132  T
Q  217 ttgaggtgctgatttggatccctttaaggaataaattttgcaaaagggaagtgtttcaattattgtattttcgactccagaaatgatagaaaatggcaat 316  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742131 ttgaggtgcagatttggatccctttaaggaataaattttgcaaaagcgaagtgtttcaattattgtattttcgactccagaaatgatagaaaatggcaat 14742032  T
Q  317 ataaacatgt-acccttttgctgtttatatattaaaggcttactgcctgtgtgattttaatactctg 382  Q
    |||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  14742031 ataaacatgtaacccttttgctgtttataaattaaaggcttattgcatgtgtgattttaatactctg 14741965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 671 - 967
Target Start/End: Complemental strand, 14745278 - 14744977
Alignment:
Q  671 atatcatcatatgtcccctctgctttgcaaagcatcagatacctcccttccagttacattcagtcaaatcgccgttagaatacaaaacatgtttgtcatg 770  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14745278 atatcgtcatatgtcccctctgttttgcaaagcatcagatacctcccctccagttacattcagtcaaatcgccgttagaatacaaaacatgtttgtcatg 14745179  T
Q  771 aaacctctgtacttattctctctcaaaacacagccaaaaagaaaccttacgtctttattcttcttcttggtcactcaatgccttcttaactcatctttac 870  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14745178 aaaactctgtacttattctctctcaaaacacagccaaaaagaacccttacgtctttattcttcttcttggtcactcaatgccttcttaactcatctttac 14745079  T
Q  871 cttaactc----ttgtcgtcgtttctgatcatctccccttaccactcatc-ttgtttttgcccaagtgcattccagctatcattatattcgtcattcttg 965  Q
    ||| ||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14745078 cttcactcgttgttgtcgtcgtttctgatcatctccccttaccactcatcattgtttttgcccaagtgcattccagctatcattatattcgtcattcttg 14744979  T
Q  966 cc 967  Q
    ||    
T  14744978 cc 14744977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 111 - 353
Target Start/End: Original strand, 15010407 - 15010650
Alignment:
Q  111 gcaggaagtaaaacagcatcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttcttt 210  Q
    |||||||||| | ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||   ||||| | |||||||||||  || |||    
T  15010407 gcaggaagtagagcagcatcaggaaggcacatctagagctgttgttccaagcagtagatctactggtatgtgtacatcatgtttttaattgaccttgttt 15010506  T
Q  211 gtggagttgaggtgctgatttggatccctttaaggaataaattttgc-aaaagggaagtgtttcaatt-attgtattttcgactccagaaatgatagaaa 308  Q
    ||||||||||||||| || || |||||||| |||||| ||| ||||| ||||| ||||||||||||||  |||| |||||||||||||||||||||||||    
T  15010507 gtggagttgaggtgcagaatttgatcccttaaaggaagaaaatttgcaaaaagtgaagtgtttcaattgcttgt-ttttcgactccagaaatgatagaaa 15010605  T
Q  309 atggcaatataaacatgtacccttttgctgtttatatattaaagg 353  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||    
T  15010606 atggcaatataaacatgtacccttttggtgtttatagcttaaagg 15010650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 111 - 324
Target Start/End: Original strand, 14290391 - 14290604
Alignment:
Q  111 gcaggaagtaaaacagcatcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttcttt 210  Q
    |||||||||| | ||| ||||||||||||||||| ||||   ||||||||||| |||||| ||||||||   |||||||| ||||||||||| |||||||    
T  14290391 gcaggaagtagagcaggatcaggaaggcacatctagagctaatgttccaagcactggatccactggtatttccacatcctgtttttaattgattttcttt 14290490  T
Q  211 gtggagttgaggtgctgatttggatccctttaaggaataaattttgcaaaagggaagtgtttcaatta-ttgtattttcgactccagaaatgatagaaaa 309  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||    
T  14290491 gtggagttgaggtgcagatttggatccctttgaggaagaaaatttgcaaaagggaagtgttccaattacttgt-ttttcgactcctgaaatgatagaaaa 14290589  T
Q  310 tggcaatataaacat 324  Q
    |||||||||||||||    
T  14290590 tggcaatataaacat 14290604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 111 - 353
Target Start/End: Original strand, 15053333 - 15053579
Alignment:
Q  111 gcaggaagtaaaacagcatcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttcttt 210  Q
    |||||||||| | || ||||| |||||||||||| |||| ||||||||||||| | |||||||||||||   |||||||| ||||||||||| ||||| |    
T  15053333 gcaggaagtagagcaacatcaagaaggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatcctgtttttaattgattttctat 15053432  T
Q  211 gtggagttgaggtgctgatttggatccctttaaggaataaattttgcaaaag-----ggaagtgtttcaatta-ttgtattttcgactccagaaatgata 304  Q
    || | || ||||||| ||||||| |||||||||| || ||| ||||||||||       |||| ||||||||| |||| |||| ||||| |||||||||     
T  15053433 gttg-gtcgaggtgcagatttgggtccctttaagaaagaaaatttgcaaaagaaagtataagtatttcaattacttgt-tttttgactctagaaatgatt 15053530  T
Q  305 gaaaatggcaatataaacatgtacccttttgctgtttatatattaaagg 353  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  15053531 gaaaatggcaatataaacatgtaccattttgctgtttataacttaaagg 15053579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 254 - 385
Target Start/End: Original strand, 14283223 - 14283354
Alignment:
Q  254 ttgcaaaagggaagtgtttcaatta-ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgtacccttttgctgtttatatattaaag 352  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||  ||||||    
T  14283223 ttgcaaaagggaagtgtttcaattacttgt-tattcgactccagaaattctagaaaatggcaatataaacatgtacccttttgctgttcataacttaaag 14283321  T
Q  353 gcttactgcctgtgtgattttaatactctgttg 385  Q
    |   ||||  ||||||||| |||| ||||||||    
T  14283322 gtacactgtatgtgtgattataatgctctgttg 14283354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 411 - 482
Target Start/End: Complemental strand, 14741961 - 14741890
Alignment:
Q  411 gtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataactgaac 482  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||    
T  14741961 gtagtatgagtcttttactttgccatgtttctagctggagttgattatcaatcttgaacaatataactgaac 14741890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 628 - 684
Target Start/End: Complemental strand, 14741678 - 14741622
Alignment:
Q  628 ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcatcatatgt 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14741678 ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcataatatgt 14741622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 15053617 - 15053681
Alignment:
Q  411 gtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaata 475  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  15053617 gtagtatgagtcttttactgtgccatgtttctaactggagttgattatcaatcttgaacaaaata 15053681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 628 - 681
Target Start/End: Original strand, 14283665 - 14283718
Alignment:
Q  628 ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcatcata 681  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14283665 ggttcaaaacttgtaagtatttatattgggaggtgaagagaaaatatcatcata 14283718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 408 - 469
Target Start/End: Original strand, 15010685 - 15010746
Alignment:
Q  408 ctggtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaac 469  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  15010685 ctggtagtatgagtcgtttactgtgccatgtttctaactggagttgattatcaatcttgaac 15010746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 15056253 - 15056144
Alignment:
Q  128 atcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttctttgtggagttgaggtgctg 227  Q
    ||||||||||||||||| |||| |||||||||||| || ||||||||||||||   |||||||  |||||||||| ||||| |||| |||| ||| || |    
T  15056253 atcaggaaggcacatctagagctgttgttccaagccgtagatctactggtatgtgtacatcctgcttttaattgattttctctgtgaagttaaggcgcag 15056154  T
Q  228 atttggatcc 237  Q
    ||||||||||    
T  15056153 atttggatcc 15056144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 14283104 - 14283196
Alignment:
Q  158 caagcagtggatctactggtatgcacacatcctattttt---aattgaatttctttgtggagttgaggtgctgatttggatccctttaaggaa 247  Q
    |||||| |||||||||||||||   |||||||| |||||   |||||  ||||||||||| |||||||||| |||||||||||||||||||||    
T  14283104 caagcactggatctactggtatttgcacatcctgttttttttaattgcttttctttgtggcgttgaggtgcagatttggatccctttaaggaa 14283196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 14283356 - 14283417
Alignment:
Q  416 atgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataact 478  Q
    |||||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  14283356 atgagtcttttactgtgccatttttctaactggagttgattatcgatcttgaac-aaataact 14283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 14741823 - 14741773
Alignment:
Q  545 atacagtacatatacagatgaaaataaatacgtttgaagctatgatttttg 595  Q
    ||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  14741823 atacaatacatatacagatgaaaataaataagtttgaagctatgagttttg 14741773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 641 - 684
Target Start/End: Original strand, 15010988 - 15011031
Alignment:
Q  641 taagtatttatattgggaagtgaagagaaaatatcatcatatgt 684  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  15010988 taagtatttatattgggaagtgaagagaaaatttcttcatatgt 15011031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 628 - 682
Target Start/End: Original strand, 14290921 - 14290974
Alignment:
Q  628 ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcatcatat 682  Q
    ||||||||||||||| |||||||||||  || |||||||||||||||||||||||    
T  14290921 ggttcaaaacttgta-gtatttatattcagaggtgaagagaaaatatcatcatat 14290974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 438 - 478
Target Start/End: Original strand, 14290660 - 14290699
Alignment:
Q  438 tttctaactggagttgattatcaatcttgaacgaaataact 478  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  14290660 tttctaactggagttgattatcaatcttgaac-aaataact 14290699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 628 - 684
Target Start/End: Original strand, 23875951 - 23876007
Alignment:
Q  628 ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcatcatatgt 684  Q
    ||||||||| |||| ||||||||||||||||||| |||| |||||||||||||||||    
T  23875951 ggttcaaaagttgtgagtatttatattgggaagtaaagaaaaaatatcatcatatgt 23876007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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