View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3413_high_18 (Length: 250)
Name: NF3413_high_18
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 17631990 - 17632226
Alignment:
| Q |
10 |
ggattgctagtagttgtatgagtgggttatatacaga----ttctgcactat--gttagtaaaattttcacttacatgtgagaatttgatttggatatag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17631990 |
ggattgctagtagttgtatgagtgggttatatacagacagattctgcactatatgttagtaaaattttcacttacatgtgagaatttgatttggatatag |
17632089 |
T |
|
| Q |
104 |
ttacatataagaatttcatcataggtgacatgtaaataaataaaaatttacaacattcatcatacaaattgttttaataatactaccataaagacagaca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17632090 |
ttacatataagaatttcatcataggtgacatgtaaataaataaaaatttacaacattcatcatacaaattgttttaataatactaccataaagacagaca |
17632189 |
T |
|
| Q |
204 |
cgtttgacactaacatgttagtctatccgcttctgtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
17632190 |
cgtttgacactaacatgttagtctattcgcttttgtg |
17632226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University