View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3413_high_2 (Length: 628)
Name: NF3413_high_2
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 9 - 610
Target Start/End: Complemental strand, 52354649 - 52354039
Alignment:
| Q |
9 |
agcagagatttaacgaggcatccaaccttaaaagcttaattactctaacactcaccatacaatccacagcaaataaattttaggaaaaacgacttaaaga |
108 |
Q |
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| T |
52354649 |
agcacagatttaacgaggcatccaaccttaaaaacttaattactctaacactcaccatacaatccacagcaaataaattttaggaaaaacggcttaaaaa |
52354550 |
T |
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| Q |
109 |
aaacgatagaacttaaaaactagaacgaaagtatagctctaaccccattctttgcagtgaattttggcatcatacctcggttgtgaaagaattataacac |
208 |
Q |
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| T |
52354549 |
aaacgatagaacttaaaaactagaacgaaagtatagctctaaccccattctttgcagtgaattttggcatcatacctcggttgtgaaagaattataacac |
52354450 |
T |
|
| Q |
209 |
acaatgcaacttctttattaagaagaataatcctctaagttcctagtatttcaaaaatttcccaccgatccatatcacgaatctcacactatgaaggaac |
308 |
Q |
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| T |
52354449 |
acaatgcaacttctttattaagaagaataatcctctaagttcctagtatttcaaaaatttcccaccgatccatatcacgaatctcacactatgaaggaac |
52354350 |
T |
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| Q |
309 |
cagttttgtaaaacttctccccaagtaattatataaaacaaaatgttcacgaatcttatattatctacgagtcttttaaacagctagctacatgatccat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52354349 |
cagttttgtaaaacttctccccaagtaattatataaaacaaaatgttcacgaatcttatattatctacgagtcttttaaacagctagctacatgatccat |
52354250 |
T |
|
| Q |
409 |
aaggcctagcacaaccggtaccaacattgttaggctggatatcttctgtggtgtcctgggttcgaactctggaccttccactttatgtgtaagagttata |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52354249 |
aaggcctagcacaaccggtaccaacattgttaggctggatatcttctgtggtgtcctgggttcgaactctggaccttccagtttatgtgtaagagttata |
52354150 |
T |
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| Q |
509 |
gtggtgcttgtcacttcgtctaccgac---------nnnnnnnnnncagctacctacatgttgatataacggtatgtctatgaactcaaacggacttttc |
599 |
Q |
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| T |
52354149 |
gtggtgcttgttacttcgtctaccgacaaaaaaaaaaaaaaaaaaacagctacctacatgttgatataacggtatgtctatgaactcaaacggacttttc |
52354050 |
T |
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| Q |
600 |
cactggtgaag |
610 |
Q |
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| T |
52354049 |
cactggtgaag |
52354039 |
T |
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