View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3413_high_9 (Length: 356)
Name: NF3413_high_9
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_high_9 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 37290747 - 37291097
Alignment:
| Q |
4 |
gcacgttggagaggtaaaattcnnnnnnnnaatatgtaaatgatgtgtctagctatataaataaacgactttcacttgatataatcaatatgttgtagga |
103 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37290747 |
gcacattggagaggtaaaattcttttttttaatatgtaaatgatgtgtctagctatataaataaacgactttcacttgatataatcaatatgttgtagga |
37290846 |
T |
|
| Q |
104 |
aggttaagctcaaacatgaagcacacaggaaatattctaatcaatggccacaaacaagcactggcttatggaatatcagtaagagnnnnnnnnnnntgtt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37290847 |
aggttaagctcaaacatgaagcacacaggaaatattctaatcaatggccacaaacaagcactggcttatggaatatcagtaagag--aaaaaaaaatgtt |
37290944 |
T |
|
| Q |
204 |
atagacatgaataattgttttatgaaaggaaattcattaacatctccattggaaatcagggctatgtaacacaagacgaggctatgctatcaagattaac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37290945 |
atagacatgaataattgttttatgaaaggaaattcattaacatctccatttgaaatcagggctatgtaacacaagacgaggctatgctatcaagattaac |
37291044 |
T |
|
| Q |
304 |
ggccagagaaactttatactactcagctcagcttcaatttccagattccatgt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37291045 |
ggccagagaaactttatactactcagctcagcttcaatttccagattccatgt |
37291097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 346
Target Start/End: Original strand, 37298118 - 37298205
Alignment:
| Q |
259 |
tcagggctatgtaacacaagacgaggctatgctatcaagattaacggccagagaaactttatactactcagctcagcttcaatttcca |
346 |
Q |
| |
|
||||||||| ||||||||||| || |||||||| |||| ||||| || | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37298118 |
tcagggctacgtaacacaagatgatgctatgctgtcaactttaacagctggtgaaactttatactactcagctcaacttcaatttcca |
37298205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 37297915 - 37298009
Alignment:
| Q |
93 |
atgttgtaggaaggttaagctcaaacatgaagcacacaggaaatattctaatcaatggccacaaacaagcactggcttatggaatatcagtaaga |
187 |
Q |
| |
|
|||||| ||||||||| | |||||||| |||| |||| || ||||||||||||||| | |||||||||||||||||||||| ||| |||||| |
|
|
| T |
37297915 |
atgttgcaggaaggttgaaatcaaacatacagcaatcagggaaaattctaatcaatggcaaaaaacaagcactggcttatggaacatcggtaaga |
37298009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University